Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1176 ATGATTCAAAATCAAGATGAGTTGATTAAGGTTGGTAGGCTTTCTGAGCCTTACAAAGGAATTGGAGATTGTTTCGGTAGAACAATCAAACATGAAGAATTCACTTCACTTTGGAGTGTTACAGTTGGAGCTAGTGTAGTATCTTACCCATTCGACACAATTCGTAGAAGAATGATGATGACATCAGGTGAAGCTGTAAAGTACAAGAGTTCATTGGATGCTTTCTCACAAATTGTGAAAACTGAAGGTCCAAAATCTCTCTTCAAATGTGTTGGTGCAAACACACTTAATCCTGTCATCCCTGAATACGTAATTCTTGGAAGAAATGGGGATAGGGAGGAGGTTGTTGTGTTGCTTCTCAAGCATGCTAATGACAGTGAAGAACTACTCCCGATCTATTCCATTATTGACTATGGATATGGTCTAATGTTGTTTGGTGTTGGGGGATTATGGGATTCAGCAGTAGGACAGTGGCACGACAGAGAGCAGAGTGAATCAACTCATGATTATTTAGTTGTTGTTCTTGTTACCGACGTTGTGGATATATTGGTTTGGGGAAAGGTTGATCCCTACCACTTTTCTGCTAGTCTCAAATATAAAGGATTTATGGAGGCTAAGGAACCAGTTAACATGGAGGAGGATCAGAATACTATTAGTTTGATTCATGGGAATGAAGACAAACTTCTTATACAATTGGAAGTCATTATTGAGGAGATGAAAAGTGCCAAACCATGGAAGAAGATTAGTGATGATGGATCTATATTGCACTTGTGTGTTAGGCATAATCATTTTGAGGCTTTGAAATTCATAGTGCAATCAGTGAGTGGAGTCAAAGACCTATTGCATGTTCAAGACAAAGAGGGTAACACCATTCTTCATTGGGCAGTTAACCTCAAGCAAATTCAGACCATAAAGTTCTTGCTTTCACTTCCTGAAATGAGAGAAGCAGCAATGACTTTGAATAATAGAGGTCTCACACCTTTGGATATAATGAACAGTTCTTCAACAGATATCATTGACATTGCAATCCAATACATTTTAATGGAATCGGGAGTCCAAAAAACTTGCACAAATGCACATTCTAGTAATTCTCATGAATCAAATCAATCACAACAACCCAATAGTAAAACAAAAAATTTGAAGAATTTCTGGTCAAAGTATCTACAACACCAAGCATTAAATCCCCCAGGTGGAGTATGGCAAGAGAATACACATGGTGGTGCATACACATGCACAACTTATGGTATTTGCAGAGCTGGAACTGCAATTATTGGTTATGATTCGGCAAAAGATTATGTTATATTTATGTCTTTTAATACTATCTCTTTTTTTGCTTCTCTTTGTGTTGTGTTGATTCTCATTTGTGGTTTTCCACTTCAGAATAAGGTCATAATGTGGATGTTAACTATTGCAATGATTGTTGCAGTTACATTTATGTTGCTAACGTATATGTGGGCCATTGGGTTCGTGACACCTGATCATATTTATTATAATGCTTATAGATTAGGGTTTTTTTTAGGTGGTGCTTGGGGTGTTATACTTCTTGTTCTTGCTTTGATTCAAATTGTAAGGTTTGTTTTCTGGATAAAGGAGAGGAAGAAACAGAAGATGCACATGTAA 1620 0.371 MIQNQDELIKVGRLSEPYKGIGDCFGRTIKHEEFTSLWSVTVGASVVSYPFDTIRRRMMMTSGEAVKYKSSLDAFSQIVKTEGPKSLFKCVGANTLNPVIPEYVILGRNGDREEVVVLLLKHANDSEELLPIYSIIDYGYGLMLFGVGGLWDSAVGQWHDREQSESTHDYLVVVLVTDVVDILVWGKVDPYHFSASLKYKGFMEAKEPVNMEEDQNTISLIHGNEDKLLIQLEVIIEEMKSAKPWKKISDDGSILHLCVRHNHFEALKFIVQSVSGVKDLLHVQDKEGNTILHWAVNLKQIQTIKFLLSLPEMREAAMTLNNRGLTPLDIMNSSSTDIIDIAIQYILMESGVQKTCTNAHSSNSHESNQSQQPNSKTKNLKNFWSKYLQHQALNPPGGVWQENTHGGAYTCTTYGICRAGTAIIGYDSAKDYVIFMSFNTISFFASLCVVLILICGFPLQNKVIMWMLTIAMIVAVTFMLLTYMWAIGFVTPDHIYYNAYRLGFFLGGAWGVILLVLALIQIVRFVFWIKERKKQKMHM* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1176 539 Pfam Ankyrin repeats (3 copies) 245 308 IPR002110 GO:0005515
Psa3g1176 539 Gene3D - 208 345 IPR036770 -
Psa3g1176 539 SUPERFAMILY Mitochondrial carrier 17 96 IPR023395 -
Psa3g1176 539 PANTHER ADP,ATP CARRIER PROTEIN, MITOCHONDRIAL 38 119 - -
Psa3g1176 539 PANTHER ADP,ATP CARRIER PROTEIN, MITOCHONDRIAL 1 38 - -
Psa3g1176 539 SUPERFAMILY Ankyrin repeat 240 330 IPR036770 -
Psa3g1176 539 Pfam Domain of unknown function 392 487 IPR026961 -
Psa3g1176 539 Pfam Mitochondrial carrier protein 42 97 IPR018108 -
Psa3g1176 539 Gene3D Mitochondrial carrier domain 39 107 IPR023395 -
Psa3g1176 539 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 38 119 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Psa3g1176 539 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 1 38 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Psa3g1176 539 SMART ANK_2a 323 356 IPR002110 GO:0005515
Psa3g1176 539 SMART ANK_2a 250 279 IPR002110 GO:0005515
Psa3g1176 539 SMART ANK_2a 287 316 IPR002110 GO:0005515
Psa3g1176 539 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 115 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1176 Psa-Chr3 106715418 106723975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1176 1 49 Antiporters AT4G28390 61.224 1.64e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1176 - - aip:107648032 331.643