Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1162 ATGAAGAGACAAAGAGATGTTGAAGGTTTAGAAAACATAAACCTATCAAATTGTCTAATGATGCTTTCTTATCCCCAACAACAGCAACAAAGAAATAAACCACATCAGAAAAGTTATGGACCAGTAGAATATGAGTGCAAAACGTGCAACAAAAAATTCTCATCCTTTCAAGCCCTAGGTGGGCACAGTGCAAGCCATAAAAGATCAAAGCTAGAAGGTGGTGAATTCATGAAAACGATTGCTTTATCTTTGAGTTTAGGAAATAAACCTAAAGTGCATGAATGTTCCATTTGTGGACAAGAGTTTTCGTTAGGGCAAGCACTAGGTGGACACATGAGAAGGCATAAAGCTTTGAGCAACCAAGAGTTTTCTTCAATAGAAAAGGTTGTGAAATTACCAGTGTTGCAGAGATTGAGTAGTGCTAGGGCTTTGTGCTTGGACTTGAATTTGACACCGTTGGAGAATGATTTGAAGTTGTTGTTTGGAAAGATGGCTCCGAATCTTGATGTTTTGGTCTGA 519 0.3834 MKRQRDVEGLENINLSNCLMMLSYPQQQQQRNKPHQKSYGPVEYECKTCNKKFSSFQALGGHSASHKRSKLEGGEFMKTIALSLSLGNKPKVHECSICGQEFSLGQALGGHMRRHKALSNQEFSSIEKVVKLPVLQRLSSARALCLDLNLTPLENDLKLLFGKMAPNLDVLV* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1162 172 Gene3D Classic Zinc Finger 78 136 - -
Psa3g1162 172 Gene3D Classic Zinc Finger 43 69 - -
Psa3g1162 172 SMART c2h2final6 93 115 IPR013087 -
Psa3g1162 172 SMART c2h2final6 44 66 IPR013087 -
Psa3g1162 172 PANTHER ZINC FINGER PROTEIN ZAT5 12 168 - -
Psa3g1162 172 Pfam C2H2-type zinc finger 44 68 - -
Psa3g1162 172 Pfam C2H2-type zinc finger 92 117 - -
Psa3g1162 172 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Psa3g1162 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Psa3g1162 172 SUPERFAMILY beta-beta-alpha zinc fingers 44 115 IPR036236 -
Psa3g1162 172 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Psa3g1162 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Psa3g1162 172 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 12 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1162 Psa-Chr3 105589963 105590839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1162 1 170 C2H2 Transcription Factor Family AT2G37430 49.162 6.89e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g1162 zf-C2H2_6 8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1162 - - gmx:100527151 235.343