Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1150 ATGGCATTTGTCTCTGGATTTCAGCGGTTACTTCGCCATTCCCACTCCCACTTCACTTCGATTCGTTTCAATTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCGAGATTGACAACGGATGAAAAGCTTACTGAAGCATTTTCTCCTTTTGGGCAGCTCATGGAAGCTAAGGTGATAATTGACAGGGCCTCTGGAAGATCAAAGGGGTTCGCTTTTGTATCGTATGCAACCGTAGAAGAAGCTGAGAAGGCGAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAACCTCGACCTCCTCCGCAAGCAGAATCTCAGGCGCCTCAAACAGGGTTCACAGTTAATAAGACTGTTGGATGGTGTGGTTGA 411 0.4599 MAFVSGFQRLLRHSHSHFTSIRFNSTLTSPKLFVSGLSRLTTDEKLTEAFSPFGQLMEAKVIIDRASGRSKGFAFVSYATVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQAESQAPQTGFTVNKTVGWCG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1150 136 Gene3D - 15 119 IPR012677 -
Psa3g1150 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Psa3g1150 136 PANTHER NUCLEOLAR PROTEIN 8 1 136 - -
Psa3g1150 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 98 IPR000504 GO:0003723
Psa3g1150 136 SUPERFAMILY RNA-binding domain, RBD 29 124 IPR035979 GO:0003676
Psa3g1150 136 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 136 - -
Psa3g1150 136 SMART rrm1_1 31 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1150 Psa-Chr3 104829828 104832265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1150 32 122 Eukaryotic Initiation Factors Gene Family AT3G16380 35.000 8.13e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1150 - - gmx:100306326 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1150 3 104829828 104832265 Psa3g1150 3 104829828 104832265 ECH