LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g1145	ATGATCAGAGAAACAGTGAATCCAAAAGCATACCCTCTGGCTGATGCACAGCTTACAATAACAATAATGGATCTTGTTCAACAAGCTGCTAATTACAAACAGCTCAAAAAGGGTGCCAACGAAGCTACAAAGACACTTAACAGAGGCATTTCCAAGTTTGTTGTCATGGCAGCAGATGCTGAACCCCTTGAGATTCTTCTCCATCTTCCTCTACTTGCCGAGGATAAGAATGTTCCGTATGTATTCGTGACATCAAAACAAGCACTAGGACGAGCATGCGGTGTTACCCGGCCGGTGATTGCATGTTCTGTGACAACTAATGAGGGAAGTCAATTGAAATCTCAAATCCAACAACTAAAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCGATGATTGGCGCAATAACAAGTG	418	0.4306	MIRETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISKFVVMAADAEPLEILLHLPLLAEDKNVPYVFVTSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKYSLFGSILTFGAMIGAITS	139

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa3g1145	139	PRINTS	Ribosomal protein L7A/RS6 family signature	35	49	IPR018492	-
	Psa3g1145	139	PRINTS	Ribosomal protein L7A/RS6 family signature	54	67	IPR018492	-
	Psa3g1145	139	PRINTS	Ribosomal protein L7A/RS6 family signature	70	80	IPR018492	-
	Psa3g1145	139	PRINTS	Ribosomal protein L7A/RS6 family signature	80	94	IPR018492	-
	Psa3g1145	139	PRINTS	High mobility group-like nuclear protein signature	8	21	IPR002415	GO:0003723\|GO:0005730
	Psa3g1145	139	PRINTS	High mobility group-like nuclear protein signature	21	36	IPR002415	GO:0003723\|GO:0005730
	Psa3g1145	139	PRINTS	High mobility group-like nuclear protein signature	38	48	IPR002415	GO:0003723\|GO:0005730
	Psa3g1145	139	PRINTS	High mobility group-like nuclear protein signature	82	94	IPR002415	GO:0003723\|GO:0005730
	Psa3g1145	139	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	22	111	IPR004038	-
	Psa3g1145	139	ProSitePatterns	Ribosomal protein L7Ae signature.	73	90	IPR004037	GO:0042254\|GO:1990904
	Psa3g1145	139	PANTHER	NHP2-LIKE PROTEIN 1	4	122	-	-
	Psa3g1145	139	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	4	122	-	-
	Psa3g1145	139	Gene3D	-	1	124	IPR029064	-
	Psa3g1145	139	SUPERFAMILY	L30e-like	6	119	IPR029064	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g1145	Psa-Chr3	104701458	104702275	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa3g1145	35	90	Cytoplasmic Ribosomal Protein Gene Family	AT2G47610	35.714	8.70e-06	42.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa3g1145	K12845		-	jre:109010760	212.616