Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1116 ATGTGTCATTCAAATCATGAAATCGTGTTTGGAAATCACGTTAACGTCATCACTGGACAAAACGGAAGTGGTAAAAGTGCAATACTTACTGCGTTGTGTGTTGCATTTGGTTGTCGAGCTAAAGGGACTCAAAGAGCATCTACTTTGAAGGATTTCATCAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTCAAGCCTGAAATGTACGGTGATGTTATCATTGTAGAACGTAGGATATCTGAGTCCACAAGCTCTGTCACATTGAAAGATCACCAAGGAAAGAAAGTTTTCAATCGGAAAGCAGATCTTCTGGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCGTGTGTGATAATGAGTCAAGACAAAAGCAGAGAGTTTTTGCATTCTGGGAATAACAAAGATAAATCTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAACGATCTTCTGGAAAGCATTTCCATTGAAATAACTACTGCACATGGAATAGTTGAAGAATTAGAGACTGCAATAAAACCTATAGAGAAGGAACTCAACGAGCTGCAGGTTAAAATTAAAACGATGGAACATGTTGAACAATTTTCCATACATGTTCAACAGTTAAAAAAAGAAACTTGCCTAGTCATGGGTTTATGA 681 0.3715 MCHSNHEIVFGNHVNVITGQNGSGKSAILTALCVAFGCRAKGTQRASTLKDFIKTGASNAVIHVEIQNEGEDAFKPEMYGDVIIVERRISESTSSVTLKDHQGKKVFNRKADLLEIIEHFNIDVENPCVIMSQDKSREFLHSGNNKDKSKFFYKATLLQQVNDLLESISIEITTAHGIVEELETAIKPIEKELNELQVKIKTMEHVEQFSIHVQQLKKETCLVMGL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1116 226 Pfam AAA domain 1 203 IPR038729 GO:0140664
Psa3g1116 226 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 1 219 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Psa3g1116 226 Gene3D - 1 221 IPR027417 -
Psa3g1116 226 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 219 - -
Psa3g1116 226 Coils Coil 179 199 - -
Psa3g1116 226 CDD ABC_SMC6_euk 1 146 - -
Psa3g1116 226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 218 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1116 Psa-Chr3 103203760 103204997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1116 1 218 Structural Maintenance of Chromosomes family AT5G07660 71.101 1.16e-109 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1116 K22804 - gmx:100816916 379.793