Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1113 ATGAAAGGCATTGAAATCTTCTGTGCATCACAAGCCTCAACTGCCATATGTCTTAACACTGATCATGCTTCATCTTCTTCTTCTTCTTCCTCAAACACCATTCAATTTGGTGGTAGAGCCATTGATCGCCACAACCCCATCATCACAGATCCAAAAAGAACTCCAGCCAGAGATTTCACTCTCCCCACCTCTTCTTCTCCATCGCCCATCAACCCAAAACCTCTCCATGATCTCAAAAAAACCAAGAAAAAGAAAACTACTACAACGACTGATAAAACAACTGAACATAAACATATTGCTAATAGTTTCACTTCAAAACCATTAGATAGTATTCTAAGAAGGAGTTGGGTTAAACCACCTTCTGATTCAATCACTCCTCCTACTTCTTCAAGATATTTGCTTGATGACATAACTTCTTTAGATGGTGTGTTAGATTATGACCCTGTTTTGGGTTTAACTAAGGTTGATGACAGCAAAAAGAAAGCTCAGGTTTTTCATGAAGATGAAAATAATCATTCATCTAAGCAACACTCTAGCTCCTCTCTTCCAAAGTCTACTTCTACAAACCAGGTTGTGGTGTTAAGGGTTTCTTTGCACTGTAAAGGCTGTGAAGGGAAAGTGCGGAAACATCTTTCTAGAATGCAAGGGGTTACGTCCTTCAATATAGACTTTGCAGCAAAGAAGGTTACAGTAGTTGGCGATGTGACTCCTTTGAGTGTTATGGCAAGCATATCAAAGGTGAAAACTGCGAAAATTTGGCCAGAAACTGCTTCGCCAAATGGATCTGGTTCAACAGTAGATGCTCCCACGATTATTCAATCCTCGGTTCTACTTGCGGTTGGAATTCCTCCATCCAAAAAGAGGCAATTGGCGCAAACCATCATGGGACCTCATAATCTTGGTTTGAATAACACTGAGTTTGGTAGGGTTAAGCAAGTTCTATCACCGGTACAATCCTCAGCCTTACGTATTGCTGTGATGGATGAGCAACGTCACTTTGGTGAGATTCAAAGAGGAAGATTTAACAGAAGAATTCCTGTTCAAACATACACCATTGAAGGAAATTCAAATAGAAGGGTAAGGATGTATTGGCTAAAGCTAAAACAGGCACGGGAAAAAACAGTTACCTTTTTGCTCCCGTCGGTTGAAATTGAATGTGAGAGAAATCCATTCAAGAGAGCCTCAGAGTTACAGAACCAGAATTTCTGA 1209 0.4036 MKGIEIFCASQASTAICLNTDHASSSSSSSSNTIQFGGRAIDRHNPIITDPKRTPARDFTLPTSSSPSPINPKPLHDLKKTKKKKTTTTTDKTTEHKHIANSFTSKPLDSILRRSWVKPPSDSITPPTSSRYLLDDITSLDGVLDYDPVLGLTKVDDSKKKAQVFHEDENNHSSKQHSSSSLPKSTSTNQVVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDVTPLSVMASISKVKTAKIWPETASPNGSGSTVDAPTIIQSSVLLAVGIPPSKKRQLAQTIMGPHNLGLNNTEFGRVKQVLSPVQSSALRIAVMDEQRHFGEIQRGRFNRRIPVQTYTIEGNSNRRVRMYWLKLKQAREKTVTFLLPSVEIECERNPFKRASELQNQNF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1113 402 CDD HMA 193 246 IPR006121 GO:0046872
Psa3g1113 402 ProSiteProfiles Heavy-metal-associated domain profile. 190 247 IPR006121 GO:0046872
Psa3g1113 402 MobiDBLite consensus disorder prediction 21 95 - -
Psa3g1113 402 PANTHER COPPER CHAPERONE 1 262 - -
Psa3g1113 402 Gene3D - 186 251 - -
Psa3g1113 402 MobiDBLite consensus disorder prediction 161 188 - -
Psa3g1113 402 SUPERFAMILY HMA, heavy metal-associated domain 189 247 IPR036163 GO:0046872
Psa3g1113 402 MobiDBLite consensus disorder prediction 21 38 - -
Psa3g1113 402 Pfam Heavy-metal-associated domain 194 240 IPR006121 GO:0046872
Psa3g1113 402 PANTHER OS08G0405700 PROTEIN 1 262 IPR044526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1113 Psa-Chr3 103082271 103087220 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1113 260 313 C3H Transcription Factor Family AT3G10810 58.621 3.08e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1113 - - cam:101501884 348.977