Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1104 ATGTTGGATCTCAATCTCAACGCGGATTCCGCTTTCGACAACTACACTCTTCCACTCTCCGCCTCACAAATGGAAAGCTCCGGCAGCTTTGATTCCTCCGTCGTCAACGCCGCCGACACTGAAGATTCATGCTCTTACGGCGAAGCCTACGCTTACAACTTCGCTATACTCAACAACAACAACCGTTCTGTCGACAACAATACTATCTCCGGTGAATTTCAACGCTCTGGCGCCGGAGAAGGTGGTGTACGGACAATTCAGCTTTTTCCTGCTAATGAATCGGGAATCTCGCCGTCGGATGGTAGAAACTGGATGAGTTTCTCGTCGGATCATCACGGTGCCATGCCGGAGCAGATTGTTGTTGCTCCACGACCTCAGCAGGTGAAGAAGAGTCGGCGTGGACCGAGGTCACGGAGTTCGCAGTATCGTGGCGTTACGTTCTACCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGAAAACAAGTTTACTTAGGTGGATTTGACACCGCGCATGCTGCAGCAAGAGCATATGATCGTGCTGCAATCAAGTTCCGAGGTGTTGATGCTGATATTAATTTCAATGTCAGCGATTATGATGAAGATATAAAGCAGATGAGTAACTTTACCAAGGAAGAGTTTGTGCATATTCTGCGGAGACAGAGCACTGGTTTCTCGAGGGGAAGCTCCAAATACCGGGGAGTTACTCTGCATAAATGTGGTCGATGGGAAGCACGTATGGGACAGTTTCTTGGGAAGAAGTATATATATCTTGGTCTATTCGATAGTGAGCTAGACGCGGCAAGAGCTTATGATAAGGCTGCTATAAAATGCAATGGAAGAGAAGCAGTTACAAATTTTGAGGCCAGCTCTTATGAAGGGGAGTTAGTTTCCCATGATAATGAAGATAGCAAGCAGAATCTTGATCTGAACTTGGGTATAGCCCCTCCTGCTAACTCTGATATTCAAATGATGAACATGCACCTAAATGGAAGTGATTTAGAAGTTCAGCCGAGCTGGGATGATATGCCCGTTGATAAGAGTGCTATGTTTGAGGACTCTGGGTCAAGATCAATCAATACTCAGCCACCTTATGGCTTTTCCATAGCATCTGAGCATCAACCTTCATTTTGGAATGGTACCAATTACTTTCCCATGTCTAAGGAAAGAGCACTAGAGAATAGGATGGAAGCTGGTCCCGTTCCAAATTGGGCATGGCAACTCCAAAGTCCTTATAATAATGGGTCAAATTTGATTCCACCTAATTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAGCCATAATACCATCAGCTGCGGATAGTAGTCAACTTCATTTTCCAAACATGGCATACATCCACCCTCATTTTGCTCCTCCAATGACCAACTCCAGCACCATACCCCCCTTCTATTGCAGGAGCTGA 1434 0.4616 MLDLNLNADSAFDNYTLPLSASQMESSGSFDSSVVNAADTEDSCSYGEAYAYNFAILNNNNRSVDNNTISGEFQRSGAGEGGVRTIQLFPANESGISPSDGRNWMSFSSDHHGAMPEQIVVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDKAAIKCNGREAVTNFEASSYEGELVSHDNEDSKQNLDLNLGIAPPANSDIQMMNMHLNGSDLEVQPSWDDMPVDKSAMFEDSGSRSINTQPPYGFSIASEHQPSFWNGTNYFPMSKERALENRMEAGPVPNWAWQLQSPYNNGSNLIPPNFSAAASSGFPSTAIIPSAADSSQLHFPNMAYIHPHFAPPMTNSSTIPPFYCRS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1104 477 ProSiteProfiles AP2/ERF domain profile. 233 290 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 CDD AP2 232 292 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 SMART rav1_2 233 296 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 SMART rav1_2 141 203 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 Pfam AP2 domain 232 282 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 PRINTS Ethylene responsive element binding protein signature 234 245 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 PRINTS Ethylene responsive element binding protein signature 272 292 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 469 - -
Psa3g1104 477 SUPERFAMILY DNA-binding domain 232 291 IPR016177 GO:0003677
Psa3g1104 477 CDD AP2 141 199 IPR001471 GO:0003700|GO:0006355
Psa3g1104 477 Gene3D AP2/ERF domain 232 291 IPR036955 GO:0003700|GO:0006355
Psa3g1104 477 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700|GO:0006355
Psa3g1104 477 SUPERFAMILY DNA-binding domain 140 199 IPR016177 GO:0003677
Psa3g1104 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1104 Psa-Chr3 102352547 102355600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1104 120 331 AP2-EREBP Transcription Factor Family AT4G36920 76.636 4.49e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa3g1104 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1104 K09284 - gmx:100797238 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1104 3 102352547 102355600 Psa3g1104 3 102352547 102355600 ECH