Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1071 ATGTTGTGTTTGTTTTTTGCAATAATAAAGAAAACGAACGGTGGTGATAGGCCTTGTTCTGTAATCTCAATCGCTCCTCCCCTCTCTTTTCCAGCGTCCGATTCCTTCTCCATTATCACCGATCTTACACACGCTCGCGCCAAATACAAATTCAGGGTTCCGACGATATGTCCGAAGCTCCGGCGAGTCCTGGCGGTGGAAGCCACGAAAGCGGCGAACATAGTCCTCGTTCTAACATCCGTGAGCAAGATAGATGCTAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCTCTGATAAGTTGTCAGAGAGAGAAGAGGAAGACTATTAACGGCGATGATTTGCTTTGGGCGATGGCTACTCTAGGTTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGAGTTATTTTGAAGTTTTATTGCTGTTGTGCTTTTTACTGATGGTAATTTTTTCATTGCTTTGCCGTGGGTTGGTTCGATTGGAAATGTTTCAGATGGAGGGTGATACAAAGGGCTCTGGCAAGGGTGGAGACTCGTCTGCTAAGAAAGATCTTCAGCAAGGTTCTAATTCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCTTACACAAATTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGCCCAGAGTAG 705 0.4454 MLCLFFAIIKKTNGGDRPCSVISIAPPLSFPASDSFSIITDLTHARAKYKFRVPTICPKLRRVLAVEATKAANIVLVLTSVSKIDAKETVQECVSEFISFITSEALISCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRESYFEVLLLLCFLLMVIFSLLCRGLVRLEMFQMEGDTKGSGKGGDSSAKKDLQQGSNSQLVHQGSFSQGVSYTNSQGQHMMVPMQGPE* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1071 234 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 85 227 IPR027113 GO:0001228|GO:0006355|GO:0016602
Psa3g1071 234 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Psa3g1071 234 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Psa3g1071 234 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Psa3g1071 234 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-8 85 227 - -
Psa3g1071 234 Gene3D Histone, subunit A 61 209 IPR009072 GO:0046982
Psa3g1071 234 SUPERFAMILY Histone-fold 85 148 IPR009072 GO:0046982
Psa3g1071 234 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 85 126 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1071 Psa-Chr3 101126055 101129643 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1071 85 234 CCAAT-HAP3 Transcription Factor Family AT3G53340 62.745 2.15e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Psa3g1071 CBFD_NFYB_HMF 4e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1071 K08065 - gmx:100798667 189.119