Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1069 ATGCACAGGACTGCAGAAGAGACGGAGCAGAGGATCCGGCATGGGTCCGGATCATTTTCCATGGATTCATTCGGTTTAATGGACTATTACTTTCCTCAACAACTCTTCACCGTCGAAAAAACCTGGCTCAATCTCACATCTTCTCTTTTTTCTTTCTTTTCTTCTCCACAAGGCCAAAACATTGTTTCTCAGGTGAAAAATGAGTATGGAAACTATGTATTGCCACTTGATTTTCAGCAGCTCAAACATATGTACCATGTTGAGGAATTTTATGAAATGTTAACGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGTTGCTGTTCACAAGGTTTTGCTTTCTAAATGGGAGAGTGATAAGATGGAGCTTTCTGCCAAAGTAGACATCCGTCTTCATAACTGTCCTGAAACCATGATTGCGTTGAAGAACTTAAAAGCAGCTTACATTGACAAGCTTGTCTCAGTGCGTGGTACCGCTGTGAAAGCCAGCACCGTCAGGCCTCTTGTGGTAGGGATGAGTTTTGAATGCAGTAAGTGCAAAGAAAGTATTTCGCGTATATTTCCCGATGGAAAATTCTCACCACCGTCAACTTGCAATTTGAATGGATGCAAAAGCAAAATCTTCAATCCATTGCGATCTACTGCTCAAACTATTGATTTTCAGAAAATAAGGGTTCAAGAATTATTAAAACATGAAGATCACGAGGAAGGACGAGTGCCTCGAACAGTGGAATGTGAACTTACTCAAGATCTTGTTGATTCATGCATTCCTGGAGATGTGGTGACGGTTACTGGAATTATCAAAGGAATTAACAATTACATGGATATTGGAGGAGGGAAGTCAAAGAACAAAAACCAAGGATTTTACTATTTGTATCTTGAAGCTGTATCCATTATGAATTCAAAGTCACAGTCGATACCTGATGATTCGCAAGACTCTAATGTCAAAGCTAGACCAACTGAGCTGTTTGATTTGTTTTCATTTTCATCGAAGGATTTAGAATTTGTTGTGAAATTTGCAGAGGAGCATGGTCCAGATTTATTTCGGCAAATCCTTCACTCTATATGCCCTTCCATCTATGGACACGAGCTTGTTAAAGCTGGGATAACTCTAGCATTATTTGGTGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTACCTGTGAGGGGAGATATTCATGTCATAATTGTAGGCGACCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAACGCAACAACTAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACCAATGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGACGAGTTTGATAAAATGTCTTCAGAGCATCAGGCTTTACTAGAGGCAATGGAGCAACAGTGTGTCTCCATTGCAAAAGCGGGATTGGTAGCAAGTTTATCATCCCGGACTTCTGTCTTAGCCGCTGCAAACCCTGTTGGTGGTCATTATAACCGGGCAAAAACTGTAAATGAAAATTTAAAAATGAGTGCTGCACTGTTGTCCCGTTTTGATTTAATTTTCATATTGCTGGACAAGCCTGATGAACTTTTGGACAAACGAGTCTCGGAGCACATTATGTCACTTCATACTGGGTCCGGCCAACACTCACAGGCATCTAAAAAGCGACGCGGAGATCCACCTTCCGATTCAAGAGCTTCCGCATCACAGAATGCTGAAGGGGTAGATTTGGGTGCTAGATCTGGTTCTTTAATTTCGAAGTTGAAACTTGACAGACGAAGAGACAATGATTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGAAGTTTTGTCTTTCCTAGGATGTCCAAGCCAGCAGCAGACATCATACAAAAGTTTTATCTAAAACTTAGAGATCATAACGTTTCGGCTGATGGTACTCCTATAACAGCAAGGCAATTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGTGCTCGGCTGGACTTGAGAGTAGAAATAACTACACAAGATGCAATGGATGCTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGACGAACACGGTGTTGTGGATTTTGGTCGAAGTGGAGGGATGAGTCAACAGAAAGAAGCAAAGCGTTTTCTAAATGCCCTTAATAAGCAATCGGAGCTGGAACAGAAAGATATATTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATACGGATACTTTCATCGATAATTTAAACAGTGTTGGTTATCTACTTAAAAAAGGACCAAAGACATACCAGGTGTTATCCTCTTCTTACTCGCGGAGCCAATCGACTAGGTCAAGGTGCTAA 2418 0.4136 MHRTAEETEQRIRHGSGSFSMDSFGLMDYYFPQQLFTVEKTWLNLTSSLFSFFSSPQGQNIVSQVKNEYGNYVLPLDFQQLKHMYHVEEFYEMLTEKPKIALLCMSVAVHKVLLSKWESDKMELSAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKASTVRPLVVGMSFECSKCKESISRIFPDGKFSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDSCIPGDVVTVTGIIKGINNYMDIGGGKSKNKNQGFYYLYLEAVSIMNSKSQSIPDDSQDSNVKARPTELFDLFSFSSKDLEFVVKFAEEHGPDLFRQILHSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHTGSGQHSQASKKRRGDPPSDSRASASQNAEGVDLGARSGSLISKLKLDRRRDNDFVPLPGQLLRKYIAYARSFVFPRMSKPAADIIQKFYLKLRDHNVSADGTPITARQLESLVRLAEARARLDLRVEITTQDAMDAVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDIFSVSEIYSLADRISLKVPDTDTFIDNLNSVGYLLKKGPKTYQVLSSSYSRSQSTRSRC* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1069 805 SMART AAA_5 392 544 IPR003593 -
Psa3g1069 805 Coils Coil 463 483 - -
Psa3g1069 805 SUPERFAMILY Nucleic acid-binding proteins 66 272 IPR012340 -
Psa3g1069 805 SMART mcm 138 705 IPR031327 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 Pfam MCM OB domain 142 269 IPR033762 -
Psa3g1069 805 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 MobiDBLite consensus disorder prediction 558 590 - -
Psa3g1069 805 Pfam MCM P-loop domain 345 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 Pfam MCM AAA-lid domain 621 704 IPR041562 -
Psa3g1069 805 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 25 800 IPR031327 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 PANTHER DNA HELICASE MCM8 25 800 - -
Psa3g1069 805 Gene3D - 169 219 - -
Psa3g1069 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Psa3g1069 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 710 IPR027417 -
Psa3g1069 805 Gene3D - 142 271 IPR012340 -
Psa3g1069 805 CDD MCM8 352 703 - -
Psa3g1069 805 Gene3D - 326 714 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1069 Psa-Chr3 101087215 101095046 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1069 18 791 Core DNA Replication Machinery Family AT3G09660 71.502 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1069 K10737 - gmx:100784549 1328.92