Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1057 ATGGACAAAAATCCTCACTCAGAAATTCAACTCCCTCCAGGATTTAGGTTCCACCCTTCTGATGAAGAGCTTGTAGTTCACTATCTAAGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTACAATCCATGGGAGCTTCCAAGTAAGGCTTTGTTTGGAGAGGAAGAGTGGTATTTCTTTACTCCAAGGGAGAGAAAATATCCAAAAGGGTTGAGACCTAATAGAGCAGCTGGTGCAGGTTATTGGAAAGCTACTGGAACTGATAAACCTATTCTTACTTCATGTGGTTTGAAAAGCATTGGAGTGAAGAAAGCTCTTGTGTTCTATAAAGGACGTCCACCTAAAGGATCTAAAACTGAGTGGATCATGCATGAATATAGGTTGCATGATTCGATGATCTCAAATTCCAAGCTTAGCGGTTCTATGCGACTGGATGAGTGGGTGTTATGCCGAGTTCGACAGAAAACCGGAAGCCCAAGAAGGAATTTGGAAGATTCAAATGAACTTAGTTATTATGAATCAACAAGTCAATTTCAGCAAATGAATGAGAATTCTAATCCTGAATCAGTCAAAAGCTATGTGCAGAATGAATATCCAATGTTACCTTATATTCTGGCTTCTAAGAGTGTTCTTCCCAATACCATTGGTATGTCATCAACCAATGCAAAACCACATGATTCATTTTATGAAGAAAACAACTTAGACATAATAGGAGCACAGTTCTTATCATCTGCAACTGAGGGATTGTTCAATAATCCTCTGAAGAGAAAAGCCGCCGAAAATAATAACGAGACGGACTTTTATGCTGTCCTCAATCAAAACCTAAGCAGAGAAGTTGAAAAAGATTTAAGCAAAGGGTACAATTTCTACAACTTAGATCAGTGGAGTTCAATCATACAACCTCAAGAGGTTAATAGCTCAGCCTTCAATGGATATACATAA 972 0.3837 MDKNPHSEIQLPPGFRFHPSDEELVVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSKALFGEEEWYFFTPRERKYPKGLRPNRAAGAGYWKATGTDKPILTSCGLKSIGVKKALVFYKGRPPKGSKTEWIMHEYRLHDSMISNSKLSGSMRLDEWVLCRVRQKTGSPRRNLEDSNELSYYESTSQFQQMNENSNPESVKSYVQNEYPMLPYILASKSVLPNTIGMSSTNAKPHDSFYEENNLDIIGAQFLSSATEGLFNNPLKRKAAENNNETDFYAVLNQNLSREVEKDLSKGYNFYNLDQWSSIIQPQEVNSSAFNGYT* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1057 323 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Psa3g1057 323 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Psa3g1057 323 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Psa3g1057 323 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 2 292 - -
Psa3g1057 323 PANTHER NAC TRANSCRIPTION FACTOR 56 2 292 - -
Psa3g1057 323 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1057 Psa-Chr3 99966418 99968106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1057 7 170 NAC Transcription Factor Family AT1G69490 67.683 5.58e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa3g1057 NAM 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1057 - - cam:101491216 543.117