Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1048 ATGGGGCATAGACATGTATATAATGCATCATCTCCAATGTTTGAGGGTGAAGCTGACCAGAATTGGAATCACATGCATACTGATCAACATCATGTGAACCACGAGGGGACTAGCTCTTCAGAGAATGGTTCTTTTATTTATCCTGCGGAAAATATATCTATAGATAATATTTATTTCCCCTCTCATTGGAACTCCAACACAAGATCAAATGGATATGCATCCTCAGGCCCCAGCATTGAAGTGCCTCCTCCACATCCTCCTCCTCCTCCTCCACCACCTCTTCCTCAGCAATTGGACACACCAGGCACTTCTAACGATCATTTTATGCATACATCTAATGCTGGACCTTTCTTTGCAGTATCTGAAAATTATGTACACCCGCCTCCGTCTTCTTCCAATTATGACAGACATGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGGGGGCATCACAAGAGGAAGAGCCCTGGAATTCCTTCAGTTTACGAGAGAGGCAGTTCAAGTGGATATTTCAATGCTGGGAGCTCAACCGATCTTCCTACACCTCCAGAATCATGGCCAGAGAAACCAAATATGAATTCTCAATATATGCCCTGGGATCATGTTGCTATGACACCCACATTCAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGCTCTGTACGGAATGTAAGGAGCCGTTCTGCACTTGATCTGGAATCCAACCTGTCTAGGACCCATTTACCAATTAACCATTCACTCAACTCGTACCTTACTGCCTCACCATTCGGCCATTGTAGCTTGGCGGATCTTTCAGCTCAGGTTACTACCCCTTTGACAAGGGATTGGAGCCAAATGAATGTAACTCCTGCTAATGGAAGAGTGTTATTACCAGATGCTAGTACTTCTGGTCTTGAGACAAGTCACTTCCCTGTTGGAAATGCTGCTACGGCTTCTAGTAATGCTCCTGCAGATGTTGGAAGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAACCTGCTAGGGGAACTCGAAGTAATTACTCTCAGAGATCCACTCCAGCTTTCAGGGCTTCTTCAAACTTGCGCATGTCCCATGCGGTACCTTCAGATAATGGACTGCCTATGGTAGCTGAAGGTTACTCTTCTAGACATCCAAGGCCGTTGACCACTGTTGGCTGGCGGAACGGTGACAGAAATGGAAGGTCTAGAATTTCGAGTGAAAGATATAGATCGTTGGCTGATGAGGCTGGGCTCCATGCTAGATTTTCCTCTGAGGTACCGGGCTTCATGATTGTTGAGCGTGCTTCACTGTATGGCTCTAGGAATATACTTGATCAGCACAGAGACATGAGAATGGACGTAGATAACATGAGCTATGAGGAACTTCTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCTGAGGATGTGCTTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGACCAATGCCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAATATGGACGATGTTGGGACACTTAAAACTTGTGGACATGACTATCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAATCTTCTGTTTTGCCTGAGGATAAGAAGGATAAATAA 1701 0.4433 MGHRHVYNASSPMFEGEADQNWNHMHTDQHHVNHEGTSSSENGSFIYPAENISIDNIYFPSHWNSNTRSNGYASSGPSIEVPPPHPPPPPPPPLPQQLDTPGTSNDHFMHTSNAGPFFAVSENYVHPPPSSSNYDRHAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPTPPESWPEKPNMNSQYMPWDHVAMTPTFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLPINHSLNSYLTASPFGHCSLADLSAQVTTPLTRDWSQMNVTPANGRVLLPDASTSGLETSHFPVGNAATASSNAPADVGSFHHEFGTSRNPTTAQSFQNLTQPARGTRSNYSQRSTPAFRASSNLRMSHAVPSDNGLPMVAEGYSSRHPRPLTTVGWRNGDRNGRSRISSERYRSLADEAGLHARFSSEVPGFMIVERASLYGSRNILDQHRDMRMDVDNMSYEELLALGERIGQVNTGLSEDVLSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKSSVLPEDKKDK* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1048 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 560 IPR013083 -
Psa3g1048 566 SUPERFAMILY RING/U-box 504 560 - -
Psa3g1048 566 Pfam Ring finger domain 512 555 IPR001841 -
Psa3g1048 566 MobiDBLite consensus disorder prediction 69 90 - -
Psa3g1048 566 ProSiteProfiles Zinc finger RING-type profile. 513 555 IPR001841 -
Psa3g1048 566 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 562 IPR045191 GO:0061630
Psa3g1048 566 SMART ring_2 513 554 IPR001841 -
Psa3g1048 566 CDD RING-H2_TTC3 512 555 - -
Psa3g1048 566 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1048 Psa-Chr3 99279631 99287507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1048 1 565 C3H Transcription Factor Family AT2G37150 42.133 2.86e-105 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1048 - - gmx:100803627 865.914