Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1039 ATGTCCAACGACTCTTTGTTCGCCGGCATTCGTTTTGACAGAAAGAAATTCGGCGCAGATATTGCCAGGTTTCAGAAAAAAAATGCCGATACTAGTTTGGCGAAGATTCAGAGTGTGACAGAAGATGAAGAAATCAAGGAAACAATAGAAGCTGTGTCTGCAAAGAAAAGGAAGCGCAAGAAAACCTCTTCTGAAGCTGTTGATGGATTCAGTGTGTTCCGAAGTTCAACATCGAAGTCAAGCGAAAAAGTCCAAGCCGATGATGATGAGTCCATTCGGCTGAAGAAAGAAAAAAATAAGCAACTCGAGCGCGATGCTATCTTTAGGAAGAGTCATAACATTCATGTGTCCGGTTACAATGTGCCGTCCCCACTTCAAAGCTTTGATGAGTTGAAAACAAGTTATAAATGTCCGTCCTATTTATTGCGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACAGCAGGCTATTCCAGTACTCTTACAGGATCGTGAATGCTTTGCCTGTGCCCCAACCGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGCTCATTCAAAAGGTGGCGTTCGAGCTGTTATCATCTGTCATAGCCGTGAATTATCTGGTCAAACATACCGAGAATGCAAAAAGTTTGCCAAAGGGGAAAAGTTTCGTATCAAGTTAATGACAAAACATCTTTTAGAAGGTTCTGATTTTTCAAATTTTCCTTGTGACATACTTATATCCACGCCCTTTCGATTACGCTTGGCTACCCAGAGGAAAAAGCTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAGTCTGATAAGCTATTTGAGCCTGGAATGTTCAAGCAGATTGATGCTATTATCAAAGCATGCACAAATCCCTCAATAGTACGCTCTCTATTCAGTGCTACTTTACCTGATTTTATTGAAGATAAAGCTCGAGAACTTATGCATGATGCTGTTCGCGTAATCGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAGAGGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATAGCAATTCGGCAGAGTTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAACGCAGTTGACAACTTCAGAGCTTGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGAGGAATGGATTTCAAAGGCATTAACTGCGTGATCAATTATGATTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGATCTGGTAGAGCAGGGAGGAGTGGCGAAGCAATTACATTTTACACAGAAGAGGATATTCCATTCTTGAAGAACGTAGCTAATCTAATGGCATCCTCAGGCTGTGAAGTTCCATCCTGGTTGACGGAGTTGCAGAAAAAGAAGTGGAGGAAGCACCGACCCAAAAGAGATTCTATCTCAACTAAACCTGACAAAGTTGCAAAAAAACAAGTGACAGAAAAAGCAGTGGAGGAAGCACCGGCCGAAAAAGATTCTATCTAG 1635 0.4214 MSNDSLFAGIRFDRKKFGADIARFQKKNADTSLAKIQSVTEDEEIKETIEAVSAKKRKRKKTSSEAVDGFSVFRSSTSKSSEKVQADDDESIRLKKEKNKQLERDAIFRKSHNIHVSGYNVPSPLQSFDELKTSYKCPSYLLRNLAELGFREPTPIQQQAIPVLLQDRECFACAPTGSGKTLAFVCPMLMKLKAHSKGGVRAVIICHSRELSGQTYRECKKFAKGEKFRIKLMTKHLLEGSDFSNFPCDILISTPFRLRLATQRKKLDLSRVEYLVLDESDKLFEPGMFKQIDAIIKACTNPSIVRSLFSATLPDFIEDKARELMHDAVRVIVGRKNMASETIKQRLVFTGSEEGKLIAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRACKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLKNVANLMASSGCEVPSWLTELQKKKWRKHRPKRDSISTKPDKVAKKQVTEKAVEEAPAEKDSI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1039 544 Pfam DEAD/DEAH box helicase 154 316 IPR011545 GO:0003676|GO:0005524
Psa3g1039 544 SMART ultradead3 149 346 IPR014001 -
Psa3g1039 544 MobiDBLite consensus disorder prediction 506 544 - -
Psa3g1039 544 MobiDBLite consensus disorder prediction 515 544 - -
Psa3g1039 544 CDD DEADc_DDX52 141 334 IPR044764 GO:0003724|GO:0005524|GO:0030490
Psa3g1039 544 CDD SF2_C_DEAD 343 473 - -
Psa3g1039 544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 331 IPR014001 -
Psa3g1039 544 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 130 158 IPR014014 GO:0003724
Psa3g1039 544 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 5 521 - -
Psa3g1039 544 SMART helicmild6 383 464 IPR001650 -
Psa3g1039 544 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 521 - -
Psa3g1039 544 Pfam Helicase conserved C-terminal domain 366 464 IPR001650 -
Psa3g1039 544 Gene3D - 87 330 IPR027417 -
Psa3g1039 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 476 IPR027417 -
Psa3g1039 544 Gene3D - 331 508 IPR027417 -
Psa3g1039 544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 503 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1039 Psa-Chr3 98624882 98631106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1039 124 502 Eukaryotic Initiation Factors Gene Family AT3G19760 30.709 6.22e-52 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1039 3 98624882 98631106 Psa3g1039 3 98624882 98631106 ECH