Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1034 ATGAATATTCTCAGTGACCCTTTTTCACTCTCCTCTTCCACTGGAGCTTTTGACAAAATCCAAAACACAAATGCAAACCCTAACCCTAATCCATTACCACAAGCCAGCAAGAAGAAAAGAAATCTACCAGATCCAGATGCAGAAGTCATTGCTCTTTCGCCGAAGACTCTAATGGCGACGAACCGATTCGTCTGCGAAATATGCAACAAAGGTTTCCAAAGGGATCAGAATCTTCAGCTGCATAGAAGAGGTCACAATCTACCATGGAAGCTAAAGCAAAGGTCCAACAAAGAACCAAGGAAAAAGGTATACATCTGCCCGGAGAAGACGTGCGTCCACCACGACGCGGCTAGGGCGCTCGGCGACCTGACCGGAATAAAGAAACATTTTAGCAGAAAACATGGAGAGAAGAAATGGAAATGTGAAAAATGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCATGTCAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACCCTCTTCTCTAGGAAGGATAGTTTTATTACACATAGAGCTTTCTGTGATGCTTTAGCTGAAGAGAGTGCAAGACAAACCTCACCACTCACTCCAACAACTCTAAATTTCAAGAATGAAGACTCAAATTTGATGAACACACAAACTAGTTTGTCACATGGATTCATATCACGTCAAAATATAGCTGGTTTTCCACATGAAGGGTTTCATGATCAGCAAAAGCCAAGTTTGTCACTGTGGTTGAACCATGAAAATCAACAGAATGTTAATCATCATCCATATAACTCAGTTGATCATGTTTCATCTGGTTTTAGTGATATCATGCAAATGGCACAAACTAGTATTACTCCAATGTCAGCTACTGCACTTCTTCAAAAAGCAGCTCAAATAGGTTCAACAAGAAGCAGTACTGCTAATAATCCTTCCATTTTCAGTGGAAGTTTTGGTGTAACGAGTTCATCTAATTCTACACAAAACCATGATGAGATTAATAACATGGTGATTAATCAGAATATGAACCAGCATGGGAATTTTAATCCAAGTAGTAGCAGTAGTGCAGCAATGGTTGGTAATAATTCTAATGGGTTTAGAGATTTTCTTGGGGTGAGTAGTAATCATCCATTTCTACCTCAAGAGCTTGCAAAGTTTGCTTCAACAATGAGCTCATCGATGATGAGTTTGAATCAATTCAATGAAGGATGCATCAATGAAAATTAG 1230 0.3927 MNILSDPFSLSSSTGAFDKIQNTNANPNPNPLPQASKKKRNLPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHVKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARQTSPLTPTTLNFKNEDSNLMNTQTSLSHGFISRQNIAGFPHEGFHDQQKPSLSLWLNHENQQNVNHHPYNSVDHVSSGFSDIMQMAQTSITPMSATALLQKAAQIGSTRSSTANNPSIFSGSFGVTSSSNSTQNHDEINNMVINQNMNQHGNFNPSSSSSAAMVGNNSNGFRDFLGVSSNHPFLPQELAKFASTMSSSMMSLNQFNEGCINEN* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1034 409 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Psa3g1034 409 Gene3D Classic Zinc Finger 59 86 - -
Psa3g1034 409 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Psa3g1034 409 MobiDBLite consensus disorder prediction 21 35 - -
Psa3g1034 409 PANTHER ZINC FINGER PROTEIN JACKDAW 6 391 IPR033243 GO:0003700
Psa3g1034 409 Gene3D Classic Zinc Finger 98 187 - -
Psa3g1034 409 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 391 - -
Psa3g1034 409 MobiDBLite consensus disorder prediction 21 43 - -
Psa3g1034 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Psa3g1034 409 SMART c2h2final6 104 134 IPR013087 -
Psa3g1034 409 SMART c2h2final6 63 85 IPR013087 -
Psa3g1034 409 SMART c2h2final6 139 159 IPR013087 -
Psa3g1034 409 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1034 Psa-Chr3 96812918 96814983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1034 286 388 IDZ Gene Family AT5G03150 40.580 9.51e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa3g1034 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1034 K25870 - gmx:100789331 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1034 3 96812918 96814983 Psa3g1034 3 96812918 96814983 ECH