Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1033 ATGCTTAATTTCATGGGTTTCTCGTTGTTGATTATGAATCCGGTTTCTTACAAGGGATTGTTCCACACATTTTTAGTGCTCGATTTTGTTTTGGTTTGCCAACTCATCACTCTTCAACCCTTTGTTTCTGCTTCAGGAAATGCTGCTGAGTTGTTTGAGAAGGCATCTCAAAGTATAAAAGGGAAACATTATACTGAGGCACTCGATGATCTAAATTCTGCAATTGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTCCCGTGCTTCAGTTCTTCGCGAGTTATGCAGATATGAGCAATCTGAAAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCCGGGCATTCAGTTGCAGAAAAGGAGCTCTCTCAGCTATTGCAGGCTCAAAGTGCACTAGAAACCGCTCAGTCCCTCTATGAGTCAGGCAACTTCACAAAGTCTTTGGAATACATTGAGAAAGTTGTTCTTGTTTTCTCTCCAGCATGCACTAAGGCTAAGCTTCTTAAGGCGAGGTTGTTATTAGCTGATAAAGAGTATGAAGGTGCCATTGCCATGTCTGGTTTTCTTCTCAAGGAAGATGAAAACAATTTGGAGGCATTGTTGTTACGTGGTCGTGGATATTACTATTTAGCTGATCACGATGTTGCCACAAGGCATTACCAGAAAGGTCTTCGCCTAGATCCCGAGCATAGCGAACTGAAAAAAGCATACTTTGGGTTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCGAGTAAGGGGAAGCTACGGGTGGCAGTAGAGGAATTCAAGAGTGCACTTGCTGTTGACCCTGACCATCGTGCACATAATGTAAATCTTTACCTTGGCTTATGTAAAGTGCTAGTCAGGCTTGGCAGAGGAAAAGACGCCTTGAACAGTTGTAACGAAGCTCTTAATATCGATGAGGAGCTTATTGATGCTCTTGTTCAGAGGGGGGAAGCTAAACTCTTGACGGAAGACTGGGAGGGAGCTGTGGAAGATCTGAAATCAGCCGCTCAAAAATCTCCTCAGGATATGAATATCCGTGAAGTATTAATGAAGGCTGAAAAAGCTTTAAAAATAAGCAAACGCAAGGATTACTACAAAATTTTGGCAATTTCAAAACATGCTTCCGCTGCTGACATAAAACGCGCATACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTCGACAATAGAGAAGAAGCAGAGGCTAAATTCCGAGAGATCGCTGCTGCATACGAGGTTCTAAGTGATGAAGACAAGCGCACGAGATACGACCGAGGGGAGGACCTTGAAGAATCAGGAATGGGAGGCGGTGGCGGTGGAGGTTTCAATCCCTTCGGCGGTGGTGGACAGCAATTTCACTTTACTTTTGATGGTGGCTTCCCTGGTGGGGGATTTCCCGGCGGCGGCGGTGGTTATGAATTTCATTTTTGA 1455 0.4357 MLNFMGFSLLIMNPVSYKGLFHTFLVLDFVLVCQLITLQPFVSASGNAAELFEKASQSIKGKHYTEALDDLNSAIEADPNLSEAYLSRASVLRELCRYEQSERSYKKFLELKPGHSVAEKELSQLLQAQSALETAQSLYESGNFTKSLEYIEKVVLVFSPACTKAKLLKARLLLADKEYEGAIAMSGFLLKEDENNLEALLLRGRGYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKSALAVDPDHRAHNVNLYLGLCKVLVRLGRGKDALNSCNEALNIDEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREVLMKAEKALKISKRKDYYKILAISKHASAADIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEVLSDEDKRTRYDRGEDLEESGMGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGYEFHF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1033 484 SUPERFAMILY TPR-like 63 351 IPR011990 GO:0005515
Psa3g1033 484 SUPERFAMILY Chaperone J-domain 363 471 IPR036869 -
Psa3g1033 484 ProSitePatterns Nt-dnaJ domain signature. 412 431 IPR018253 -
Psa3g1033 484 CDD DnaJ 369 424 IPR001623 -
Psa3g1033 484 SMART dnaj_3 368 427 IPR001623 -
Psa3g1033 484 Gene3D DnaJ domain 367 475 IPR036869 -
Psa3g1033 484 Coils Coil 405 425 - -
Psa3g1033 484 PRINTS DnaJ domain signature 371 389 IPR001623 -
Psa3g1033 484 PRINTS DnaJ domain signature 389 404 IPR001623 -
Psa3g1033 484 PRINTS DnaJ domain signature 407 427 IPR001623 -
Psa3g1033 484 PRINTS DnaJ domain signature 427 446 IPR001623 -
Psa3g1033 484 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Psa3g1033 484 Pfam DnaJ domain 369 432 IPR001623 -
Psa3g1033 484 Pfam Tetratricopeptide repeat 83 114 IPR019734 GO:0005515
Psa3g1033 484 Pfam Tetratricopeptide repeat 134 184 - -
Psa3g1033 484 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Psa3g1033 484 ProSiteProfiles dnaJ domain profile. 369 435 IPR001623 -
Psa3g1033 484 SMART tpr_5 48 81 IPR019734 GO:0005515
Psa3g1033 484 SMART tpr_5 197 230 IPR019734 GO:0005515
Psa3g1033 484 SMART tpr_5 128 161 IPR019734 GO:0005515
Psa3g1033 484 SMART tpr_5 315 348 IPR019734 GO:0005515
Psa3g1033 484 SMART tpr_5 82 115 IPR019734 GO:0005515
Psa3g1033 484 SMART tpr_5 281 314 IPR019734 GO:0005515
Psa3g1033 484 SMART tpr_5 163 196 IPR019734 GO:0005515
Psa3g1033 484 Pfam Tetratricopeptide repeat 257 325 - -
Psa3g1033 484 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 11 484 IPR044620 -
Psa3g1033 484 Gene3D Tetratricopeptide repeat domain 43 366 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1033 Psa-Chr3 96713391 96718375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1033 365 432 C2H2 Transcription Factor Family AT1G74250 44.444 4.36e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1033 K09523 - gmx:100804685 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1033 3 96713391 96718375 Psa3g1033 3 96713391 96718375 ECH