Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1028 ATGGCAAAAACAAACGGTTGCAGTCGAACTCGTCCTTCTAATAAAAAGAAGGATAATGAGTCAAAGAAGAGGTTGATCGATGGGAACAGAGATGTGGATCCTCAGTTATGGCATGCTGTTGCTGGAGGAATGGTTCGAATTCCAGAACTTAACTCTAACATCTTCTACTTCCCTCAAGGCCATGCTGAGCATGCATATGAACCTGTCCATTTTCCTGCCGACTTCAAAATTCCATCCCAAATTCCATGTAGGGTTGCGGCTATCCATTATAGGGCTGATCCTGACACAGATGAAGTGTATGCAAAACTCAGACTTGTTCCGCTACATATTAGTGAAGTTAGTTTTGATGATGACGCTGTTGGTGGTGGCATCGATAACATGTCTGAAACTAAGTATCAGTCTTATACGAAAACCTTGACACAATCTGATGCAAACAATGGTGGCGGATTCTCTTGTCCTAGGAAATGTGCAGAAACACTTTTTCCTCCATTAGACTATTCAGATATGCTTCCTACTCAGGACATTTTTCCCATGGATGTGCATGGAGAAACATGGAGCTTTAGACATGCTTATAGGGGCATGCCGAAGCGGCATCTGTTAACAACTGGGTGGAGTGACTTTGTGACCGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAACACAGTGACCTTCATATTGGAATACGAAGGTCTAAAAAACGAAACGACTGTATATTTAAATTTTCATCAAAAAGGAAACTTGGACCATCATACGGTAGACTTACTTCCTCTTTTGGAGAGTTGAGAATAAGTGATAAGGTGATGGGAGTAGGTAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAGAACTTTGTGTCAATATGAAACCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAACCCTCTTTGATTAGAAAAGCCCTTCAGGTTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATTGAAACGGAAGACTCGTCAAGGACACATTGGTTAATGGGAACAATTGCTTCTGTTCAGGCTGCTGATCCAGCATGGCCTGACTCTCTTTGGAGAGGTTTGCAGGTTACATGGGACCAACCTGATTTAGTTACAAATACCAAAATGCTGAATCCGTGGGAAGTCGAAGTAGTATCGGACATGCCTCCGTTCCCTTTTGTCCCTTTCTTGCCATCAAGTAAGAAACTGAGATGGGATCAACAGCCAAGTTTCGCCATGGATGGCCAATTAACAATGCCAACATTTCCAAACAATGAAACTCCAAATGTTGATAGTACTACAGGCATGCAGGGAGCCAGGCATGATGATATTAGTTTCTCCAAATCATCCTTTCACCTTGAAAAAATTCCATTAGAACCCTTTATGTCTCATTTCCGACAATCATTTAATCATGATGCCTCAACATCCACTTCTGTCTCTAATAGCCCCACATTGCAAAAGGAGAGCAACAATAAATCATCACAGCAACTGGATCATGCGAAGCCGAAAGAGTTGGTGCTTTTTGGCCAAACAATAAAGCATGCAAAGCCGAAAGAGTTGGAGCTTTTTGGCGAAACAATGGATCATGCGAAGCCGAAAGTGTTGGTGCTTTTTGGTCAAAGAATACAAATTGACAGTGAAAACGAAAATGCTGAGATGAAAATCACTAATTATTTGTCTGATCCTTTACAATGCAAAAAAGATAGTAATTCTGAAGGAGAAACAGTGGAGATTGAGCATTCCGGGAGTTCATCAAAAGAGCCGGCGTGA 1788 0.4189 MAKTNGCSRTRPSNKKKDNESKKRLIDGNRDVDPQLWHAVAGGMVRIPELNSNIFYFPQGHAEHAYEPVHFPADFKIPSQIPCRVAAIHYRADPDTDEVYAKLRLVPLHISEVSFDDDAVGGGIDNMSETKYQSYTKTLTQSDANNGGGFSCPRKCAETLFPPLDYSDMLPTQDIFPMDVHGETWSFRHAYRGMPKRHLLTTGWSDFVTDKLLVSGDSLVFVRDEHSDLHIGIRRSKKRNDCIFKFSSKRKLGPSYGRLTSSFGELRISDKVMGVGKVKAEDVIEAVELCVNMKPFDVVYYPRVGTPEFFVKPSLIRKALQVRWCCGMRFKMAIETEDSSRTHWLMGTIASVQAADPAWPDSLWRGLQVTWDQPDLVTNTKMLNPWEVEVVSDMPPFPFVPFLPSSKKLRWDQQPSFAMDGQLTMPTFPNNETPNVDSTTGMQGARHDDISFSKSSFHLEKIPLEPFMSHFRQSFNHDASTSTSVSNSPTLQKESNNKSSQQLDHAKPKELVLFGQTIKHAKPKELELFGETMDHAKPKVLVLFGQRIQIDSENENAEMKITNYLSDPLQCKKDSNSEGETVEIEHSGSSSKEPA* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1028 595 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa3g1028 595 MobiDBLite consensus disorder prediction 573 595 - -
Psa3g1028 595 Pfam B3 DNA binding domain 136 236 IPR003340 GO:0003677
Psa3g1028 595 SUPERFAMILY DNA-binding pseudobarrel domain 130 237 IPR015300 -
Psa3g1028 595 MobiDBLite consensus disorder prediction 11 27 - -
Psa3g1028 595 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Psa3g1028 595 MobiDBLite consensus disorder prediction 478 502 - -
Psa3g1028 595 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 521 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1028 595 MobiDBLite consensus disorder prediction 478 505 - -
Psa3g1028 595 Gene3D - 323 394 - -
Psa3g1028 595 Gene3D - 133 236 IPR015300 -
Psa3g1028 595 SMART B3_2 135 237 IPR003340 GO:0003677
Psa3g1028 595 MobiDBLite consensus disorder prediction 1 27 - -
Psa3g1028 595 CDD B3_DNA 134 235 IPR003340 GO:0003677
Psa3g1028 595 PANTHER AUXIN RESPONSE FACTOR 27 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1028 Psa-Chr3 96322251 96324256 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1028 30 448 B3 DNA Binding Superfamily AT4G30080 49.441 2.36e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa3g1028 B3 5.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1028 - - mtr:MTR_7g101280 634.409