Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1025 ATGGCAGGATCTAGGAAAGGAAAAGAAAAAGCTTGCAATAGAGAGTCAAAGAAGAAGAAGAAAACAGATGGGAACAAAGATGTGGATCCTCAGCTGTGGCATGCTTTTGCTGGAACAATGGTGCAAACTCCTCAAGTTAACTCTAGCATCTTCTACTTCCCTCAAGGTCATGCGGAGCATGCATGTGAACCTGTCAATTTTAGTGCTGACTCCCAAATTCCATCCCAAATTCTATGTAGAGTTGCAGCAATCCATTATAGGGCTGATCCTGACACAGATGAATTGTATGCAAAACTCAGACTTGTTCCTCTGAATAATACCGAGGTTAGTTTTGATGATGACGATGTTGCTGGCATCAATGATATGTCTGTAACTAAGAATAACTATCAATCTTATACGAAAACCTTGACAAAATCTGATGCAAACAGCGGAGGTGGATTCATTTGTCCTAAGAATTGTGCAGAAACACTTTTTCCTCCATTAGACTATTCATTTACGCTTCCTTCTCAGCACATATATCCCACGGATGTGCATGGCGAAATGTGGAAATTCAGACATTCTTATAACAGCATGCGGAAGCAGCATCGGTTAACAGCTGGGTCTAAAAGAGGAAACGACTTTGGATTTAACCCTTCATCAAACAGCAAACCTGGTAATGAAATTGGAACTCGTCTTGTACCATCCTACGGAGAACTTACCTCGTCTTCAAGAGAGAAAGACGATAAACCTCAAAAAACTAGTAAAGGAAATGAAATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTACTGAAGCAGTAAAACTTGGTGTCAATATGCAGCCGTTTGATGTCGTTTACTATCCTTGGGTTGGTACTCCCAAGTTTTTTGTGAAAAGCTCTTTAATTAGAACAGCATTTCAGATTAAGTGGTGTTCTGGAATGAGGTTCCAGATGGCCATTGAAACTAAAGATCCGTTAATGATAAATTGGTTAATGGGAACAATTGCTTCTGTTGAGACTGCTGATCCAGCATGGCCCGACTCTCCTTGGAGACGTCTGCAGGTTACATGGGATCTTCCTGATTTAATGACAAATACAAAAAGGCTGAATCACTGGCAAATTGAAATATTCCCGGCTATGTCACTTCCAATCTCTCTTTCCCCTTTCTTGCCTCAATACCTAACTTTTCCAAACAACTTTCAAACACCAAATGTACCAGAAACTAGTACTGCAAGCATGCAGGGAGCCAGGCATGATCATTTTAGTCACCTCGAAAACATTCCATTAGATAACCCGGCATTGCAAAAGGAGAGCACCAGTGAGAAGGACTCGCCCTCAATATCAATTTCTACACAACCATCGGAGAAACTGGATCATGCGAAGCCGAACCAGATTGTGCTTTTAGGACAAATAATACAAATTGACTCGGGAAATGAAAATGCTGAGAAGAAAATCACTAGTTCTTGTTCTGATCCTCTACAAGACCTGCCAAAACTTTCCTCTGGTGAGAGGCTGGAATGTGATCCCGAGAGCCAATGCAGAAAAGATACATTGCCAGGAGAAACAGTGGAGATTGAAGATTGA 1563 0.4127 MAGSRKGKEKACNRESKKKKKTDGNKDVDPQLWHAFAGTMVQTPQVNSSIFYFPQGHAEHACEPVNFSADSQIPSQILCRVAAIHYRADPDTDELYAKLRLVPLNNTEVSFDDDDVAGINDMSVTKNNYQSYTKTLTKSDANSGGGFICPKNCAETLFPPLDYSFTLPSQHIYPTDVHGEMWKFRHSYNSMRKQHRLTAGSKRGNDFGFNPSSNSKPGNEIGTRLVPSYGELTSSSREKDDKPQKTSKGNEMGIGKVKAEDVTEAVKLGVNMQPFDVVYYPWVGTPKFFVKSSLIRTAFQIKWCSGMRFQMAIETKDPLMINWLMGTIASVETADPAWPDSPWRRLQVTWDLPDLMTNTKRLNHWQIEIFPAMSLPISLSPFLPQYLTFPNNFQTPNVPETSTASMQGARHDHFSHLENIPLDNPALQKESTSEKDSPSISISTQPSEKLDHAKPNQIVLLGQIIQIDSGNENAEKKITSSCSDPLQDLPKLSSGERLECDPESQCRKDTLPGETVEIED* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1025 520 MobiDBLite consensus disorder prediction 205 221 - -
Psa3g1025 520 SUPERFAMILY DNA-binding pseudobarrel domain 125 199 IPR015300 -
Psa3g1025 520 Gene3D - 302 375 - -
Psa3g1025 520 MobiDBLite consensus disorder prediction 494 520 - -
Psa3g1025 520 Pfam Auxin response factor 270 347 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa3g1025 520 MobiDBLite consensus disorder prediction 428 451 - -
Psa3g1025 520 MobiDBLite consensus disorder prediction 1 28 - -
Psa3g1025 520 MobiDBLite consensus disorder prediction 480 520 - -
Psa3g1025 520 Gene3D - 130 207 IPR015300 -
Psa3g1025 520 CDD B3_DNA 131 200 IPR003340 GO:0003677
Psa3g1025 520 PANTHER AUXIN RESPONSE FACTOR 18 200 - -
Psa3g1025 520 PANTHER AUXIN RESPONSE FACTOR 235 476 - -
Psa3g1025 520 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 200 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1025 520 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 235 476 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1025 520 MobiDBLite consensus disorder prediction 428 452 - -
Psa3g1025 520 MobiDBLite consensus disorder prediction 193 254 - -
Psa3g1025 520 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1025 Psa-Chr3 96281341 96283233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1025 26 495 B3 DNA Binding Superfamily AT4G30080 36.174 2.01e-98 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1025 - - mtr:MTR_7g101280 545.814