Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1020 ATGGGAAACATCTCAAGCAACGGTTCCAACCGTCGTCGACACGGTGTCGCTTCCAGGAGAACTCACCCACCGCCACAGCCTCCGGTAACACCTCAACCCGAAATCGCTGCACATCAATTTGTTTACCCTAGTGCCGCACCGTACCCGAACCCGAACCCTCCCATGCATTATCCGCAGTATCATTATCCTGGTTATTATCCACCGCCGGTACCTATGCCACATCCTCATCAGCATCCTCATCATCAACATCCTCATCAACAACAGCATCCTCATCCGCATATGGACCCCAGATATTACCCTTGTGGACCGGTCATGAATCAACCTGCACCGTTTGTTGAGCACCAGAAAGCTGTTACTATAAGGAATGATGTTAATATTAAGAAGGATTCTCTTGCGATTTCGCCCGATGAGGAAAACGCTGGGTTCTTCCTTGTTTCGTTTACCTTTGATGCCACCATTTCTGGGAGCATCACCATATTTTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGAAAACCATCTTGCACCTGTGACTATACAATTCCAGCAAGGTCTTGGACAGAAGTTTAGACAGCAGGCTGGAACTGGTATTAATTTTTCAACGTTTGAGGAGTCAGATTTATTGAAGGTGGGTGACATGGATGTCTACCCTTTAGCAGTGAAGGCAGAGGCATCCTCTAATAATCAGGATGAATCAAATGAAACTGTGGCATCTGGTAACACAAACTCTCAGATAACTCAAGCAATATTCGAGAAGGAAAAAGGAGAATTTCGGGTAAAAGTTGTTAAGCAGATCTTGTCAGTGAATGGAATGCGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGGCGTGGATGACAACGACCAAGGGAAAGAGTGTGTTATCTGCTTGTCAGAGCCCCGTGACACAATTGTTCATCCCTGCCGGCATATGTGCATGTGTAGTGGATGTGCGAAGGTTTTGAGGTTCCAGACAAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGACTGAGGAGTAA 1074 0.4628 MGNISSNGSNRRRHGVASRRTHPPPQPPVTPQPEIAAHQFVYPSAAPYPNPNPPMHYPQYHYPGYYPPPVPMPHPHQHPHHQHPHQQQHPHPHMDPRYYPCGPVMNQPAPFVEHQKAVTIRNDVNIKKDSLAISPDEENAGFFLVSFTFDATISGSITIFFFAKEDEGCILTPTKENHLAPVTIQFQQGLGQKFRQQAGTGINFSTFEESDLLKVGDMDVYPLAVKAEASSNNQDESNETVASGNTNSQITQAIFEKEKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESGVDDNDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTEE* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1020 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 356 - -
Psa3g1020 357 Pfam Zinc finger, C3HC4 type (RING finger) 301 347 - -
Psa3g1020 357 SUPERFAMILY RING/U-box 302 347 - -
Psa3g1020 357 MobiDBLite consensus disorder prediction 1 36 - -
Psa3g1020 357 SMART ring_2 303 341 IPR001841 -
Psa3g1020 357 PANTHER MAHOGUNIN 1 356 IPR045194 GO:0061630
Psa3g1020 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 352 IPR013083 -
Psa3g1020 357 ProSiteProfiles Zinc finger RING-type profile. 303 342 IPR001841 -
Psa3g1020 357 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 302 342 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1020 Psa-Chr3 96116951 96124392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1020 97 322 C3H Transcription Factor Family AT3G09770 62.500 5.65e-96 287
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1020 3 96116951 96124392 Psa3g1020 3 96116951 96124392 ECH
Psa3g1020 3 96116951 96124392 Psa6g1570 6 83922619 83926501 PCT