Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1019 ATGAAAGCTCACACTCTTGTTACTGATATTGGAGGGGATTCCTATTCAAAGTACGGCAAAGAATTGACTGAAGAATATAAAGATAACACGCTTTTGGATCCTCATGGTAAAACTGGAGAAGGTGATGGTGGAGTTGTTTGTTACAAGTGCTTACACGGAGGAGGAACATTCTTGTGCTGTTGTGGTAAAAGATGTGGAAGGAGGTATCACCCGTCTTGTTTGGATCCTCCTCTCAAATTTCTTCCTATTGGGTTTTGGTATTGTATTTGTTGTAATGAGAAAAAAATAAAGCTTGGTGTGCATTCTGTTTCTAAAGGGGTAGAAACCATATTTGATTCCCGAGAAGTCATTTCTAAAGATGAAGTGCCAGTTATCCAAAGGGAGTACTTTGTCAAGTATCAGAGCCTTGCTCATGCTCACAACTGTTGGATTCCAGAAAAAAAGATGCTTATTGAGGCTCCGAAGCTTTTCGAAAAGTACAAGAAGAAACAACAGGTTGTCAGGTGGAGAAAAGATTGGAGTATACCTCATCGGTTGCTGCTTAAAAGGAAAATTATATTGTCAAAGCAAAATGCTGACCCTTTTGATGGAAATGATGGCAATGATTCAATTTGCCAATATGAATGGCTTGTGAAATGGACGGGTCTTGGTTATGATCATGTTACATGGGAGTTAGATGATGCTTCATTCATGAGATCTTCTAAAGGCATGAAACTTGTAGAGAATTATGAAAGTCGTCAAAAGAGATCAGTTCGACTGTCAAATCCTTTTGAAGCTAACGAGGAGAGAAAAGTTTCCTTTACCGAATTATCGGTATTATCATCATTTGGAGATTCACCAGGATTGTATAACCAGCATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCACAAAGGTCAGAATGCTGTTATCGTTGACGATCAAATTGACCAGGAGCGGGTCACGAAGGTGATTTTGTATATATCATCTTTGAGTTGTAATGTGAAAAGGCCTTTTCTCATAATCTCAACTTCTACTGGCCTCTCTACATGGGAAACAAAATTCTTAAATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAACAAATTATGTACGGGATAGCATCAGAGCATTAGAGTTTTATAATGAAGATGGTGGTTGTTCATTTCAAATATTACTATCATCATCTGATATCATCATTGAGGACTTACATGCATTGAGATTCATTCAATGGGAAGCAATAATAATTGATGAATGCCATCGACCCAGAATTTTAGGACAGTTTGACAATCTCAATACTCTAAAAGCTGAGACAAGGCTCCTTCTCATGAGTGGACAAATCAAGGAAGATCGTGCGGATTATATCAAACTGCTTTCATTCCTTAAGTCAGGACATGATGAGTTACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATATATTGCACTTAAGTGCAGTTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCGCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCATTGTCGTTATGCTCAGGCCAAAAGTCTGGTTTTGTTGACGCCCTCCGCGACCTTATCATCTCAACAAGAAAGTGTTGCAACCATCCTTATCTCCTCGACCCAACACTGAGTAGTTTGGTCACTGGAGGTCTGCCTGTTGAAGAACATTTAGATATTGGAATAAAAGCAAGTGGAAAATTGCAACTTCTTGAAAAGATCCTCGTTGAAGCTAAAAGTCGTGAGCTAAGAGTGATGCTATTGTTTCAGTCTAGCGGTGGTTCTGGATCAATTGGAAATATTCTGGATGATGTTCTCTGTCAGAGATTTGGAAACGATTGCTATGTACGATATGGTAGAGGTTACATTCCTTCAAAGAAGCAAGCTGCTTTGGCCGCATTTAATGATAGAGAAAGTGGGCGATTTGTTTTCTTGATAGAGAGCAGTGCTTGTATCCCTAGCATTAAGCTGTCATCTGTGGATACTATTATATTATTTGACAGTGGTTTGGACCCGCAAAATGACCTAAAATGCCTACAAAAAATGTCCATCAGCTCAAAGTTCAATAAGTTAACAGTTTTGAGATTGTACTCATACTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGTATAGCTCTTGACAGCAACGTGCAGTTGATTAGCCAGAGTACTAATCACAGCCTGCTAAAATGGGGTGCCTCTTATCTGTTCAGTAAGCTTGATGACTTGCATGGAAGCGGCACCTCACTCTCTGCTTCAGACATCTCTGATCATTCAATTCTGAATGATGTAATCTTTGAATTATCGTCCAAATTGGTTTGTGATAGCAATAGGACCGATTGTCATGGACAGTCATTCATATCGAGAGTACAACAGAATGGAGGGGAATATGCAAGAAACATTTCATTGTTAGGAGAAAGAGACATGAAGAAATTGGGGAATGAAACAGGTACTTTTTCCTGGAGTGATCTACTAAAAGGAAGGAATCCTCACTGGAGATTTTTGCCTGTTTCGCCTCAAAGGATCAGAAAAAGAGTTGAATGTTTTCATCACTCACTAACAGGATCTGAGTATGAAAATGACACCGTTTCAAGAAAGAGGAAGACAGAGTCCAAGGATAATGTAGATCCTGAGGAGAGGAAAGTCACCAAGGATAGTGTTGACCCCAAAAGAAGGAAAGTTTTCAAGGATATTGTTGGTACAAAGAGGAGGGAATTCTCAAAGAGTGTTGCTGATCCTAAGACTGGGAAAGTGACCAAGGAAATTGTTGATTCCAACGGCTGTAAAGTGTCTGTGATTATTGTTGATTCCAAACATGTGAAAAAAAAGTCGAAGAACAAGAATCATCGAAGTGCTGGTAAAAGGAAAAGAAAATTGAATGGAGTATCTGTAATGAAGAAACCAATTCAAAAACAAAAGAAGCGGCCTAACATGCCCAAGAGCACCAAACTCATGTCAAAGCCTGATATATCAGATCTCTGTGATGTTCTACACATTTCGAAAAATGTCAAGGCTGTCGCCATGAGACTTCTTGAGTATGTATTTGAACATTACAATATTTGTTGCCTGGAAGTTTCTATAGTGCAAGCATTTAACATATCGGTGTGTTGGCTTGCAGCTTCTTTGTTGAAACACGATATTGATAGGAAACGTTCACTTGATCTTGCAAAACGGCACTTGAATTTCAATTGCAAGGAGGAAGATGCCACCTATGTTTACAATGAACTGCAGAAGCATGAGAAAGATTTTCGAAGCTGTTTACAAAATGAACTTTGTGTTGAGAAAAATAATACACATCCTGGTTCAGGCTCCTTGACACCTGAGCTGAAAGATTTGGTAGAGGAGGAGAAACAAAAGGGTTTTCAGCATCCTCATGTTTTAAATCTTGTGAAATCTCCCACAAATGAAGCTGATCTTCCAAGAAAATCTCCCACAACCGTGCTATTTTCACAAAACCATATTTCTACAGAAGACTTTCATAAAGAACCTTACATGGCTCATGAAATTGCTACATCTCAAAAGAACCCTGGTAGTTTTCCTGTGGAACGGGCAGCAGATGCTACTTCCATGGAATGTGTTCCAGATGAAAGAATAAATTCGGTTAACCTGGTTGCAGCTGAAGTTTCATCGCCCGAGCAGTGGAACGAAGTCCCCAATTTAAATAATGATTCCGATACTGTTAACCATGAAACAGGTTCTTTGGAAAGACAGAGTCCCATTGTAAGTTCAGATATTACACAATGTGATGACAGTTATTTTGAAGATCTTCAAATTTTAATGAATCAAGTGATTGACATTGACAATTCTATGAATATGTCAACTCATCCTGCGCAACTTCTCAATGTTGAGACAGATACTGTAACTTGTGATAGAACTGCTGTTCCCGAGGTAATACAGCCGTACAGTACAGTGAGTCCTATATGTGGTGAGTCAACTACTTCAGAGTTTTCCGAGTGGCCTTTACCGTATACGCAACTATCACTTGCAGATTTAGTGGCATTTTCACAGACATCACAACCCACCAGTGAAGCGCCCGGGAATGAAAATGTCACTTGTGCTTCTCATGACATTACCAATCCCAGATATACGAACAGTGATCATTTTCAAGCTCATTACGGGCCATTTGAAATGCCAATTGAAATACCCCATGATGCAGACTCATTATTAATAGAAATGGAGCAAATAAGAAAGATGAAGGAAGCATACAAGACACGCGAAGAAAAAAGATTGCAGCTGCAGTCTGACTACACAAAGGAGTGTGAAATGTTAAGGGAAAAGTACAATATGTTGCATCAGAATGTTGATGCTGCGGTAGCATTAAAGTATGAGGAACTTGAGATGCAGCGTAATATCGTTTCCAAGAGTATGGTATTAGCTGAAGTATGGAGCCGAAGTTATAGTAGTTGTTTCTATAGAAATGCGCATGGAAACATCCATCTGTGA 4482 0.3927 MKAHTLVTDIGGDSYSKYGKELTEEYKDNTLLDPHGKTGEGDGGVVCYKCLHGGGTFLCCCGKRCGRRYHPSCLDPPLKFLPIGFWYCICCNEKKIKLGVHSVSKGVETIFDSREVISKDEVPVIQREYFVKYQSLAHAHNCWIPEKKMLIEAPKLFEKYKKKQQVVRWRKDWSIPHRLLLKRKIILSKQNADPFDGNDGNDSICQYEWLVKWTGLGYDHVTWELDDASFMRSSKGMKLVENYESRQKRSVRLSNPFEANEERKVSFTELSVLSSFGDSPGLYNQHLSYVNKLRMCWHKGQNAVIVDDQIDQERVTKVILYISSLSCNVKRPFLIISTSTGLSTWETKFLNLAPSANLVVYKGTNYVRDSIRALEFYNEDGGCSFQILLSSSDIIIEDLHALRFIQWEAIIIDECHRPRILGQFDNLNTLKAETRLLLMSGQIKEDRADYIKLLSFLKSGHDELHFSSASISNLKSQLEQYIALKCSSDSSRFIEYWVPAQLSSLQLEQYCSMLLSNSLSLCSGQKSGFVDALRDLIISTRKCCNHPYLLDPTLSSLVTGGLPVEEHLDIGIKASGKLQLLEKILVEAKSRELRVMLLFQSSGGSGSIGNILDDVLCQRFGNDCYVRYGRGYIPSKKQAALAAFNDRESGRFVFLIESSACIPSIKLSSVDTIILFDSGLDPQNDLKCLQKMSISSKFNKLTVLRLYSYFTVEEKVLMLAKEGIALDSNVQLISQSTNHSLLKWGASYLFSKLDDLHGSGTSLSASDISDHSILNDVIFELSSKLVCDSNRTDCHGQSFISRVQQNGGEYARNISLLGERDMKKLGNETGTFSWSDLLKGRNPHWRFLPVSPQRIRKRVECFHHSLTGSEYENDTVSRKRKTESKDNVDPEERKVTKDSVDPKRRKVFKDIVGTKRREFSKSVADPKTGKVTKEIVDSNGCKVSVIIVDSKHVKKKSKNKNHRSAGKRKRKLNGVSVMKKPIQKQKKRPNMPKSTKLMSKPDISDLCDVLHISKNVKAVAMRLLEYVFEHYNICCLEVSIVQAFNISVCWLAASLLKHDIDRKRSLDLAKRHLNFNCKEEDATYVYNELQKHEKDFRSCLQNELCVEKNNTHPGSGSLTPELKDLVEEEKQKGFQHPHVLNLVKSPTNEADLPRKSPTTVLFSQNHISTEDFHKEPYMAHEIATSQKNPGSFPVERAADATSMECVPDERINSVNLVAAEVSSPEQWNEVPNLNNDSDTVNHETGSLERQSPIVSSDITQCDDSYFEDLQILMNQVIDIDNSMNMSTHPAQLLNVETDTVTCDRTAVPEVIQPYSTVSPICGESTTSEFSEWPLPYTQLSLADLVAFSQTSQPTSEAPGNENVTCASHDITNPRYTNSDHFQAHYGPFEMPIEIPHDADSLLIEMEQIRKMKEAYKTREEKRLQLQSDYTKECEMLREKYNMLHQNVDAAVALKYEELEMQRNIVSKSMVLAEVWSRSYSSCFYRNAHGNIHL* 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1019 1493 SMART PHD_3 46 92 IPR001965 -
Psa3g1019 1493 MobiDBLite consensus disorder prediction 872 900 - -
Psa3g1019 1493 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 163 IPR023780 -
Psa3g1019 1493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 102 IPR013083 -
Psa3g1019 1493 Gene3D - 106 166 - -
Psa3g1019 1493 SMART chromo_7 104 165 IPR000953 -
Psa3g1019 1493 SMART chromo_7 172 248 IPR000953 -
Psa3g1019 1493 Gene3D - 182 268 - -
Psa3g1019 1493 Gene3D - 493 727 IPR027417 -
Psa3g1019 1493 Gene3D - 282 492 IPR038718 -
Psa3g1019 1493 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 461 IPR014001 -
Psa3g1019 1493 ProSitePatterns Zinc finger PHD-type signature. 47 91 IPR019786 -
Psa3g1019 1493 MobiDBLite consensus disorder prediction 953 973 - -
Psa3g1019 1493 SUPERFAMILY Chromo domain-like 64 168 IPR016197 -
Psa3g1019 1493 Gene3D - 1398 1477 - -
Psa3g1019 1493 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 59 1111 - -
Psa3g1019 1493 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1125 1474 - -
Psa3g1019 1493 ProSiteProfiles Chromo and chromo shadow domain profile. 180 255 IPR000953 -
Psa3g1019 1493 ProSiteProfiles Chromo and chromo shadow domain profile. 105 172 IPR000953 -
Psa3g1019 1493 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 59 1111 - -
Psa3g1019 1493 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1125 1474 - -
Psa3g1019 1493 MobiDBLite consensus disorder prediction 952 973 - -
Psa3g1019 1493 ProSiteProfiles Zinc finger PHD-type profile. 44 94 IPR019787 -
Psa3g1019 1493 SUPERFAMILY Chromo domain-like 200 247 IPR016197 -
Psa3g1019 1493 Coils Coil 1398 1418 - -
Psa3g1019 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 329 461 IPR027417 -
Psa3g1019 1493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 730 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1019 Psa-Chr3 96066661 96089292 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa3g1019 SNF2_N 1.3e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1019 - K11643 gmx:100813574 1417.52