Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1013 ATGAAGTGTTTTTCATTCCAGTCTGGTAATAAGAAAGATGAACCCAAAGGCTTACAATCGGTGTCGGGCCGGTCGGACAGTTCCGCCTATGTTGATGTTGAAGATAGAAGATGTGGTTCTGAATTGAATTCTCTTGATGTTTCGGATAGTGGCAGCGTGGAATCCCTCAGGAGAAACGCACCTTCTAATTTGTCGCAAAGGCCGAGTGATCTTAGAGTTTTTACTGTATCTGAACTGAAATCGGCCACAAAGAGTTTCAGTCGATCGGTTATGCTTGGGGAGGGCGGGTTCGGTTGTGTCTATCAGGGTGTAATCAGAAGTGTAGATGACCCTTCTCGAAGAATTGAGGTTGCTGTTAAACAACTTAGTAAAAGAGGAGTGCAGGGACATAGGGAATGGGTGACGGAAGTGAATGTTCTGGGCATTGTTGAGCATCAAAATCTTGTGAAGCTAGTGGGATACTGTGCCGATGATGACGAAAGAGGAATCCAACGGCTTCTGATATATGAATACATGCCAAACAAAAGCGTGGAACACCATTTGTCTCACCGAGCGGAGACTCCTCTCCCATGGAGTAGGAGATTAAAAATAGCACAAGACGCGGCTCGTGGATTAACATACCTGCATGAAGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCCTCAAATATCCTTTTGGATGATCAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCGAGACTGGGACCATCGGATGGACTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGGTACGCAGCTCCTGAATATATCCAAACCGGACGTCTCACATCGAAGAATGACGTATGGAGCTATGGTGTTTTCCTTTATGAGCTCATTACTGGCAGACGCCCTTTAGATCGAAATCGCCCCAAAGGTGAACAGAAGTTGTTGGAATGGATAAAGCCATACCTATCAAATACAAAGAAATTTCAACTGATATTGGATCCAAGACTTGATAAGAAACAAGTAATCAAATCAGCCCAAAGACTTGCTACGATAGCTAACCGATGCTTAGTTAAAAACCCGAAGAATCGCCCGAAGATGAGCGAGGTTTTGGGAATGGTGAATGAAATAGTAGAATCATCGTCGTCCGACTCTAATTCAAAACTACCCTTGAAGAATGTTTCGAGAGTAGAGGTTTCTCAAGACATTGAAATGAACAACACGAAGAAGCGGAGCATGGATCAGAAGTCTAGAGAAAGTAATTGGTTTTTTAAGATATGGAGACCAAAGCTTTTAAGAACATGA 1284 0.4291 MKCFSFQSGNKKDEPKGLQSVSGRSDSSAYVDVEDRRCGSELNSLDVSDSGSVESLRRNAPSNLSQRPSDLRVFTVSELKSATKSFSRSVMLGEGGFGCVYQGVIRSVDDPSRRIEVAVKQLSKRGVQGHREWVTEVNVLGIVEHQNLVKLVGYCADDDERGIQRLLIYEYMPNKSVEHHLSHRAETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDDQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIKPYLSNTKKFQLILDPRLDKKQVIKSAQRLATIANRCLVKNPKNRPKMSEVLGMVNEIVESSSSDSNSKLPLKNVSRVEVSQDIEMNNTKKRSMDQKSRESNWFFKIWRPKLLRT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1013 427 ProSitePatterns Protein kinases ATP-binding region signature. 92 120 IPR017441 GO:0005524
Psa3g1013 427 PANTHER KINASE 1B 12 422 - -
Psa3g1013 427 MobiDBLite consensus disorder prediction 12 27 - -
Psa3g1013 427 MobiDBLite consensus disorder prediction 44 64 - -
Psa3g1013 427 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1013 427 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Psa3g1013 427 MobiDBLite consensus disorder prediction 1 30 - -
Psa3g1013 427 SUPERFAMILY Protein kinase-like (PK-like) 63 366 IPR011009 -
Psa3g1013 427 CDD STKc_IRAK 92 370 - -
Psa3g1013 427 PANTHER OS01G0588500 PROTEIN-RELATED 12 422 - -
Psa3g1013 427 Gene3D Transferase(Phosphotransferase) domain 1 172 394 - -
Psa3g1013 427 Gene3D Phosphorylase Kinase; domain 1 58 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1013 Psa-Chr3 95798520 95800840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1013 72 364 Glycoside Hydrolase AT3G07070 46.780 4.67e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa3g1013 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1013 - - gmx:100813060 712.22