Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1009 ATGGTGAGAACTAGCAAAGCAAACAGAAGAGGTTGTAATCGAGATGCTGCTAATATGAATAACGAGTCAGAGAAGAAGTCGATGGATGGGAACAAAGATGTGGATCCTCAGTTATGGCATGCGGTTGCTGGAGGAATGGTGCAAATTCCAGAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCGTATGAACCTGTCAATTTTAGTGTTGACTTCAAAACTCCATCTTTTATTCCATGTAGAGTTGCGGCTATTGATTATAGGGCTGATCCGGAGACAGATGAGGTATATGCAAAACTCCGGCTTGTTCCTTTACATATTAACGAGGTTGGTTTTGATAATGACGCTGTTGCTGGCATCGATGAGATGCCGGAGACTAAGAATAAATATCAATCTTATACAAAAGTCTTGACACAATCTGATGCAAACAATGGTGGTGGATTTTCTTGTCCTAGGTATTGTGCAGAAACACTTTTTCCTCCACTAGACTATTCAGGTATCCCTCCTTCTCAGTACATATATCCCACTGATGTTCATGGTGAAACGTGGGAATTCAAACATGTTTATAGGGGCACGCCGAAGCGGCATTTGTTAACAACCAACTGGAGTGATTTTGTAACAGACAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTTTGAGGGCTGAAAACGGTGATCTTCATGTTGGAATTCGAAGGTCTAAAAGACGAAACGATATTGGAATTAACCCTTCATCAAAGAGGAAACATGATAGTGAGATTGGAATTCGTATTGGATTATCATACTTAGGACTTACCTCGTCTTCAGAAGAGATAGATAATAAACTTCAAAAAAATGATAAAGAAAATGGATTGAGAATAAGTGATAAGATTATGGGTAGGGGAAAAGTGAAGGCGGAAGATGTTCTTGAAGCAGTAAGACTTGGTGTCAATATGCAGCCGTTTGATGTTGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAAACCTCTTTGATAAGAACAGCACTTCAGATTAGGTGGTGTTGTGGAATGAGGTTCAAGATGGCCATTGAAACCGAAGACTCATCAAGGATAAGTTGGTTTATGGGAACCATTGCTTCTGTTGAGGCTGCTGATCCAGCATGGCCAGACTCTCTTTGGAAATCTCTGCAGGTTACATGGGATGAACCTGATTTACTTAAAAATACGAAAAGGGTGAATCCGTGGCAAGTGGAAATAGTATCGAACATGCCTTCAATCCCTTTTTCCTCTTTCTTGCCACCATCACGGAAGAAACTGAGATTGCTTGAACATCAAGCTTTCCCCATTGATGGCCAATTTTCAATGCCGACTTTTCCAAACTACATTCAAACTCCAAATGTTCCAATATTTCATTTACCAGAAACTAGTCTTGCTGGTATGCAGGGAGCCAGGCATGATCCTTTTGGTCTTTCTTTATCGGACCTTCACATCAATAAGTCTCCATTAGGTCTCTTTAAGCCTAATTTCCAACAACCATTTGACCACAATGCTTCAACATCGATGACTGTCCCAAGTAAAGCTGTATTGCCAAAGGCAAACGATAGTGAGAATGTTTCGTGCTCAGCATCAGAGAAGCAGGATCATGCAAAGCCGACTCAGATTGTGCTTTTTGGCCAAACCATACTGATTGACCCGGGGCATGAAAATGCTGTGAAGAAAATCACTAGTAATTTTTCTAGTCAGCTACAAGACCCGCCAAAACAAACCTCTGGTGAGAGGCATGAAGAAAATTTGGCAGGAGAAACATTGGAGATTGAACATTCAGAAACTTCATCGAAAGAGATAGGAGGTTGA 1839 0.4116 MVRTSKANRRGCNRDAANMNNESEKKSMDGNKDVDPQLWHAVAGGMVQIPEVNSKIFYFPQGHAEHAYEPVNFSVDFKTPSFIPCRVAAIDYRADPETDEVYAKLRLVPLHINEVGFDNDAVAGIDEMPETKNKYQSYTKVLTQSDANNGGGFSCPRYCAETLFPPLDYSGIPPSQYIYPTDVHGETWEFKHVYRGTPKRHLLTTNWSDFVTDKLLVSGDSLVFLRAENGDLHVGIRRSKRRNDIGINPSSKRKHDSEIGIRIGLSYLGLTSSSEEIDNKLQKNDKENGLRISDKIMGRGKVKAEDVLEAVRLGVNMQPFDVVYYPRVGTPEFFVKTSLIRTALQIRWCCGMRFKMAIETEDSSRISWFMGTIASVEAADPAWPDSLWKSLQVTWDEPDLLKNTKRVNPWQVEIVSNMPSIPFSSFLPPSRKKLRLLEHQAFPIDGQFSMPTFPNYIQTPNVPIFHLPETSLAGMQGARHDPFGLSLSDLHINKSPLGLFKPNFQQPFDHNASTSMTVPSKAVLPKANDSENVSCSASEKQDHAKPTQIVLFGQTILIDPGHENAVKKITSNFSSQLQDPPKQTSGERHEENLAGETLEIEHSETSSKEIGG* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1009 612 CDD B3_DNA 137 238 IPR003340 GO:0003677
Psa3g1009 612 Pfam B3 DNA binding domain 139 239 IPR003340 GO:0003677
Psa3g1009 612 SUPERFAMILY DNA-binding pseudobarrel domain 134 241 IPR015300 -
Psa3g1009 612 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 577 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1009 612 MobiDBLite consensus disorder prediction 572 612 - -
Psa3g1009 612 MobiDBLite consensus disorder prediction 1 31 - -
Psa3g1009 612 Gene3D - 136 239 IPR015300 -
Psa3g1009 612 ProSiteProfiles B3 DNA-binding domain profile. 138 240 IPR003340 GO:0003677
Psa3g1009 612 SMART B3_2 138 240 IPR003340 GO:0003677
Psa3g1009 612 MobiDBLite consensus disorder prediction 583 612 - -
Psa3g1009 612 Pfam Auxin response factor 315 392 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa3g1009 612 PANTHER AUXIN RESPONSE FACTOR 25 577 - -
Psa3g1009 612 Gene3D - 347 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1009 Psa-Chr3 95663707 95666237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1009 32 491 B3 DNA Binding Superfamily AT4G30080 53.092 4.70e-160 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa3g1009 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1009 - - mtr:MTR_7g101280 817.764