Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1005 ATGGCAGGATCTAGGAAAGAAAAAGAAAAAGGTTGCAATAGAGAGTCAAAGAAGAAGAAGACTGATGGGAACAAAGATGTGGATCCTCAGCTGTGGCATGCTCTTGCTGGAACAATGGTGCAGATTCCAAAAGTTAACTCTAGCATCTTCTACTTCCCTCAAGGTCATGCTGAGCATGCATGTGAACCTGTCAATTTTAGTGCTAACTCCAAAATTCCATCCCAAATTTCATGTAGAGTTGCAGCAATCCATTATAGGGCTGATCCTCACACAGATGAATTGTATGCAAAACTTAGGCTTGTTCCTCTGAGTAATACCGGCGTTAGTTTTGATGATGACGCTGTTGGTGGCATCAATGATATGCCCGTAACTAGAAATAAATATAAATCTTATACAAAAACCTTGACACGTACTGATGCTTCTAGTGGATTATTTTGTCCTAAGATCTGTGTAGAAACCATTTTTCCTCCATTAGATTATCTAGGTAACCATACTTCCCAGGACATTTATGTCACGGATGTTCACGGTGAAACATGGGAATTCAAACATGTTTGTAGGGGCACGCCAAAGGTGCATATGTTAACAACTGGGTGGAGTGATTTTCTAAAAGATAAGCAGTTAGTTTCGGGGGATTCCCTTGTGTTTTTGAGGGCTGAAAATGGTGATATTCATGTTGGAATTCGAAGGTCTAAAAGACAAAACGATATTGGAGTTAACCCTTCATCAAAGAGGAAACTTGGTAGTGAAAATGGAATTCGTATTGGATCATCCTACTTCGGACTTACCTCGTCTTCAGAAGAGATAGATAATAAACTTCAACAAAATGATCAAGAAAATGGATGGAGAATAAGTGATAAGATTATGGGGAGGGGAAAAGTGAAGGCTGAAGATGTTCTTGAAGCAGTAAGACTTGCTGTCAATATGCAGCCGTTTGATGTCGTTTACTATCCTCGGGTTGGTACTCCCGAGTTTTTTGTGAAACCCTCTTTGATTAGAAAAGCACTCCAAATTAGGCGGTGTTGTGGAATGAGGCTGCTGATCCAGCATGGCCTGACTCTCACGTCAAGGACACATTGCTTTATCGGAACAATTGCTTCTGTTCAGGCTGCTGATCCAGCATGGCCTGACTCTCTTTGGAGACTTCTGCAGGTTACTTGGGATGTATCTTATTTACTTAAAAATACGAAAAGGGTGAATCCGTGGCAAGTGGAAATAGTATCGAACATGCCACCGTCAAGGAAGAAACCGAGATTGCTTGAATATCAAGCTTTCCCCATTGATGGCCAATTTTCAATGCCAGTTTTTCATTTACCAGAAACTAGTCCTGCTGGTATGCAGGGAGCCAGGCATGATCCTTTTGGTCTCTCTTTATCAGACCTTCACATCAATGAGTCTCCATTGGGTCTCCTGAATCCTAATTTCCAACAACCATTTGATCACAATGCTACACCATCGATGACAGTCCCGAGTAACGCTGTATTGCAAAAGGCGAATGACAGTGAGAATGTTTCGTGCTCAGCATCAGAGAAGCAGGATCATGCAAAGCCGACTCAGATTGTGCTTTTAGGCCAAACCATTAGGATTGACCCGGGGCATGAAAATGCTGTGAAGAAAAAACTGAATAAATCTGAAATTTTATATCATGTCACTCAAAGAGGAAACTTGGTAGTGAAAATGGAATTCGTATTGGATCATCCTACTTCGGAAGAGATAGATAATAAACTTCAAAAAAATGATAAAGAAAATGGACTGAGAATAAGTGATAAGATTACGGGTAGGGGAGGCTGA 1788 0.4094 MAGSRKEKEKGCNRESKKKKTDGNKDVDPQLWHALAGTMVQIPKVNSSIFYFPQGHAEHACEPVNFSANSKIPSQISCRVAAIHYRADPHTDELYAKLRLVPLSNTGVSFDDDAVGGINDMPVTRNKYKSYTKTLTRTDASSGLFCPKICVETIFPPLDYLGNHTSQDIYVTDVHGETWEFKHVCRGTPKVHMLTTGWSDFLKDKQLVSGDSLVFLRAENGDIHVGIRRSKRQNDIGVNPSSKRKLGSENGIRIGSSYFGLTSSSEEIDNKLQQNDQENGWRISDKIMGRGKVKAEDVLEAVRLAVNMQPFDVVYYPRVGTPEFFVKPSLIRKALQIRRCCGMRLLIQHGLTLTSRTHCFIGTIASVQAADPAWPDSLWRLLQVTWDVSYLLKNTKRVNPWQVEIVSNMPPSRKKPRLLEYQAFPIDGQFSMPVFHLPETSPAGMQGARHDPFGLSLSDLHINESPLGLLNPNFQQPFDHNATPSMTVPSNAVLQKANDSENVSCSASEKQDHAKPTQIVLLGQTIRIDPGHENAVKKKLNKSEILYHVTQRGNLVVKMEFVLDHPTSEEIDNKLQKNDKENGLRISDKITGRGG* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1005 595 CDD B3_DNA 129 229 IPR003340 GO:0003677
Psa3g1005 595 SUPERFAMILY DNA-binding pseudobarrel domain 126 233 IPR015300 -
Psa3g1005 595 MobiDBLite consensus disorder prediction 1 26 - -
Psa3g1005 595 Pfam B3 DNA binding domain 133 230 IPR003340 GO:0003677
Psa3g1005 595 SMART B3_2 131 231 IPR003340 GO:0003677
Psa3g1005 595 PANTHER AUXIN RESPONSE FACTOR 17 544 - -
Psa3g1005 595 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 544 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1005 595 Gene3D - 129 230 IPR015300 -
Psa3g1005 595 ProSiteProfiles B3 DNA-binding domain profile. 166 231 IPR003340 GO:0003677
Psa3g1005 595 Gene3D - 339 411 - -
Psa3g1005 595 Pfam Auxin response factor 301 383 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1005 Psa-Chr3 95587938 95590152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1005 25 461 B3 DNA Binding Superfamily AT4G30080 45.203 2.31e-116 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa3g1005 B3 5.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1005 - - mtr:MTR_7g101280 665.225