Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1002 ATGGCAAGAACCAACGGTTGCAGTCGAACTCGTCCTTCTAATAAAAAGAAGGATAATGAGTCAAAGAAGAGGTTGATCGATGGGAACAGAGATGTGGATCCTCAGTTATGGCATGCTGTTGCTGGAGGAATGGTTCGAATTCCAGAAATTAACTCTAACATCTTCTACTTCCCTCAAGGTCATGCCGAGCATGCATATGAACCTGTCCATTTTCCTGCCGACTTCAAAATTCCATCCCAAATTCCATGTAGGGTTGCAGCTATCCATTATAGGGCTGATCCTCACACAGATGAAGTGTATGCAAAACTCAGACTTGTTCCGCTACATATATGTGAAGTTAGTTTTGATGATGACGCTGTTGGTGGCGGCATCGATAACATGTCTGAAACTAAGTATCAGTCTTATACGAAAACGTTGACACAATCTGATGCAAACAATGGTGGTGGATTCTCTTGTCCTAGGAAATGTGCAGAAACACTTTTTCCTCCATTAGACTATTCAGATATGCTTCCTACTCAGGACATTTTTCCCATGGATGTGCATGGAGAAACATGTGCAAACAATGGTGGTGGATTCTCTTGTCCTAGGAAATGTGCAGAAACACTTTTTCCTCCATTAGACTATTCAGATATGCTTCCTACTCAGGACATTTTTCCCATGGATGTGCATGGAGAAACATGGATATTCAGACATGCTTATAGGGGCATGCCGAAGCGGCATCTGTTAACAACTGGGTGGAGTGACTTTGTGACCGATAAGCTACTTGTTTCGGGGGATTCACTTGTGTTTGTGAGAGATGAACACAGTGATCTTCATGTTGGAATACGAAGGTCTAAAAAACGAAACGACTGTATATTTAACTTTTCTTCAAAGAGGAAACTTGGACCATCCTACGGTGGACTTATTTCCTCTTTTGGAGAGTTGAGAATAAGTGATAAGGTAATGGGAGTTGGTAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTTTGTGTCAATATGAAACCGTTTGATGTGGTTTACTATCCTCGGGTTGGTACTCCTGAGTTTTTTGTGAAACCCTCTTTGATTAGAAAAGCCCTTCAGGTTAGGTGGTGTTGTGGAATGAGGTTCAACATGGCCATTGAAACGGAAGACTCGTCAAGGAAACATTGGTTTATGGGAACAATTGCTTCTGTTCAGGCTGCTGATCCAGCATGGCCTGACTCTCTTTGGAGACGTTTACAGGTTACATGGGACCGACCTGATTTAGTTACAAATACCAAGATGCTGAATCCGTGGGAAGTCGAAGTAGTATCGGACATGCCTCCGTTCCCTTTTCTCCCTTTCTTGCCATCAAGTAAGAAACTGAGATGGGATCAACAGCCAAGTTTTCCCATAAATGGCCAATTAGCAATGCCAACATTTCCAAACAATGAAACTCCAAATGTTGATAGTACTGTAGGCATGCAGGGAGCCAGGCATGATGATTTTAGTTTCTCCAAATCATCCTTTCACCTTGAAAAAATTCCATTAGAACTCTTTATGTCTCATTTCCGACAATCATTTGATCAGGATGCCTCAACATCCGCTACTGTCTCTAATAGACCAACATTGCAAAAGGATAGCAGCAGTGAGAATGTTTCAGACTCGATAACAATTTCTAAACAACCATCAGAGAAACTGGATCATGCGAAGCCGAAAGAGTTGATGCTTTTTGGCCAAACAATGAATCATGCGAAGCCGAAAGAGTTGATGCTTTTTGGCCAAACAATAAAGCATGCAAAGCCGAAAGAGTTGGAGCTTTTTGGCGAAACAATGGATCATGCGAAGCCGAAAGTGTTGGTGCTTTTTGGTCAAAGAATACAAATTGACAGTGGAAACGAAAATGCTGAGATGAAAATCACTAATTATTTGTCTGATCCTTTACAATGCAAAAAAGATAGTACTTCTGAAGGAGAAACAGTGGAGATTGAACATTCAGGGAGTTCATCCAAAGAGGCAGCGTAA 1992 0.4152 MARTNGCSRTRPSNKKKDNESKKRLIDGNRDVDPQLWHAVAGGMVRIPEINSNIFYFPQGHAEHAYEPVHFPADFKIPSQIPCRVAAIHYRADPHTDEVYAKLRLVPLHICEVSFDDDAVGGGIDNMSETKYQSYTKTLTQSDANNGGGFSCPRKCAETLFPPLDYSDMLPTQDIFPMDVHGETCANNGGGFSCPRKCAETLFPPLDYSDMLPTQDIFPMDVHGETWIFRHAYRGMPKRHLLTTGWSDFVTDKLLVSGDSLVFVRDEHSDLHVGIRRSKKRNDCIFNFSSKRKLGPSYGGLISSFGELRISDKVMGVGKVKAEDVIEAVKLCVNMKPFDVVYYPRVGTPEFFVKPSLIRKALQVRWCCGMRFNMAIETEDSSRKHWFMGTIASVQAADPAWPDSLWRRLQVTWDRPDLVTNTKMLNPWEVEVVSDMPPFPFLPFLPSSKKLRWDQQPSFPINGQLAMPTFPNNETPNVDSTVGMQGARHDDFSFSKSSFHLEKIPLELFMSHFRQSFDQDASTSATVSNRPTLQKDSSSENVSDSITISKQPSEKLDHAKPKELMLFGQTMNHAKPKELMLFGQTIKHAKPKELELFGETMDHAKPKVLVLFGQRIQIDSGNENAEMKITNYLSDPLQCKKDSTSEGETVEIEHSGSSSKEAA* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1002 663 MobiDBLite consensus disorder prediction 641 663 - -
Psa3g1002 663 MobiDBLite consensus disorder prediction 522 550 - -
Psa3g1002 663 ProSiteProfiles B3 DNA-binding domain profile. 220 279 IPR003340 GO:0003677
Psa3g1002 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 186 572 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1002 663 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 184 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1002 663 PANTHER AUXIN RESPONSE FACTOR 27 184 - -
Psa3g1002 663 PANTHER AUXIN RESPONSE FACTOR 186 572 - -
Psa3g1002 663 CDD B3_DNA 187 277 IPR003340 GO:0003677
Psa3g1002 663 Gene3D - 365 436 - -
Psa3g1002 663 SUPERFAMILY DNA-binding pseudobarrel domain 128 181 IPR015300 -
Psa3g1002 663 MobiDBLite consensus disorder prediction 11 27 - -
Psa3g1002 663 SUPERFAMILY DNA-binding pseudobarrel domain 186 279 IPR015300 -
Psa3g1002 663 MobiDBLite consensus disorder prediction 640 663 - -
Psa3g1002 663 MobiDBLite consensus disorder prediction 1 27 - -
Psa3g1002 663 MobiDBLite consensus disorder prediction 522 557 - -
Psa3g1002 663 Pfam B3 DNA binding domain 189 278 IPR003340 GO:0003677
Psa3g1002 663 Gene3D - 185 278 IPR015300 -
Psa3g1002 663 Gene3D - 133 184 IPR015300 -
Psa3g1002 663 Pfam Auxin response factor 329 410 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa3g1002 663 SMART B3_2 135 279 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1002 Psa-Chr3 95567401 95570069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1002 30 500 B3 DNA Binding Superfamily AT4G30080 45.257 2.39e-132 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa3g1002 B3 1.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1002 - - mtr:MTR_7g101280 625.165