Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1001 ATGGCAGGATCTAGGAAAGGAAAAGAAAAAGCTTGCAATAGAGAGTCAAAGAAGAAGAAGAAAACAGATGGGAACAAAGATGTGGATCCTCAGCTGTGGCATGCTTTTGCTGGAACAATGGTGCAAATTCCAAAAGTTAACTCTAGCATCTTCTACTTCCCTCAAGGTCATGTTGAGCATGCATGTGAACCTGTCAATTTTAGTGCTGACTCCCAAATTCCATCCCAAATTCCATGTAGAGTTGCAGCAATCCATTATAGGGCTGATCCTGACACAGATGAATTGTATGCAAAACTCAGACTTGTTCCTCTGCAGATTAGTGAGGTTAGTTTTGATGATGGCGATGTTGCTGGCATCAATGATATGTCTGTAACTAAGAATAACTATCAATCTTATACGAAAACCTTGACAAAATCTGATGCAAACAATGGAGGTGGATTCATTTGTCCTAAGAATTATGCAGAAACACTTTTTCCTCCATTAGACTATTCATTTACGCTTCCTTCTCAGCACATATATCCCACGGATGTGCATGGCGAAATGTGGAAATTCAGACATTCTTATAACAGCATGCGGAAGCAGCATCGATTAACAGCTGGGTGGAGTGCTTTTGTAACCAACAAGCAACCTGTTTCAGGGGATTCACTTGTGTTTTTGAGAGCTAAAAACGGAGAACTTCATATTGGAATTAGAAGGTCTAAAAGAGGAAACGACTTTGGATTTAATCCTTCATCAAAGAGCAAACCTGGTAATGAAATTGGAACTCGTCTAGTACCATCCTACGGAGAACTTACCTCGTCTTCAAGAGAGAAAGACGATAAACCTCAAAAAACTAGTAAAGGAAATGAAATGGGAATTGGGAAAGTGAAGGCTGAAGATGTTATTGAAGCAGTAAAACTTGGTGTCAATATGCAGCCGTTTGATGTCGTTTACTATCCTTGGGTTGGTACTCCCGAGTTTTTTGTGAAAAGCTCTTTAATTAGAACAGCATTTCAGATTAAGTGGTGTTCTGGAATGAGGTTCCAGATGGCCATTGAAACTAAAGATCCGTTAATGATAAATTGGTTAATGGGAACAATTGCTTCTGTTGAGGATGCTGATCCAGCATGGCCCGACTCTCTTTGGAGACGTCTGCAGGTTACATGGGATCTTCCTGATTTAATGACAAATACAAAAAGGCTGAATCACTGGCAAATTGAAATGTTCCCGGATATGTCACTTCCAATCTCTCTTTCCCCTTTCTTTCCTCAATACCTAACTTTTCCAAACAACTTTCAAACACCAAATGTACCAGAAACTAGTACTGCAAGCATGCAGGGAGCCAGGCATGATCATTTTAGTCACCTCGAAAACATTCCATTAGATAACCCGGCATTGCAAAAGGAGAGCACCAGTGAGAAGGATTCGCCCTCAATATCAATTTCTACACAACCGTTGGAGAAACTGGATCATGCGAAGCCGAACCAGATTGTGCTTTTAGGACAAATAATACAAATTGACTCGGGAAATGAAAATGCTGAGAAGAAAATCACTAGTTCTTCTTCTGATCCTCTACAAGACCTGCCAAAACTTTCCTCTGGTGAGAGGCTGGAATGTGATCCCGAGAGCCAATGTAAAAAAGATACATTGCCAGGAGAAACAGTGGAGATTGAAGATTGA 1659 0.4051 MAGSRKGKEKACNRESKKKKKTDGNKDVDPQLWHAFAGTMVQIPKVNSSIFYFPQGHVEHACEPVNFSADSQIPSQIPCRVAAIHYRADPDTDELYAKLRLVPLQISEVSFDDGDVAGINDMSVTKNNYQSYTKTLTKSDANNGGGFICPKNYAETLFPPLDYSFTLPSQHIYPTDVHGEMWKFRHSYNSMRKQHRLTAGWSAFVTNKQPVSGDSLVFLRAKNGELHIGIRRSKRGNDFGFNPSSKSKPGNEIGTRLVPSYGELTSSSREKDDKPQKTSKGNEMGIGKVKAEDVIEAVKLGVNMQPFDVVYYPWVGTPEFFVKSSLIRTAFQIKWCSGMRFQMAIETKDPLMINWLMGTIASVEDADPAWPDSLWRRLQVTWDLPDLMTNTKRLNHWQIEMFPDMSLPISLSPFFPQYLTFPNNFQTPNVPETSTASMQGARHDHFSHLENIPLDNPALQKESTSEKDSPSISISTQPLEKLDHAKPNQIVLLGQIIQIDSGNENAEKKITSSSSDPLQDLPKLSSGERLECDPESQCKKDTLPGETVEIED* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1001 552 MobiDBLite consensus disorder prediction 504 521 - -
Psa3g1001 552 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 511 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa3g1001 552 SMART B3_2 132 234 IPR003340 GO:0003677
Psa3g1001 552 Gene3D - 334 407 - -
Psa3g1001 552 PANTHER AUXIN RESPONSE FACTOR 18 511 - -
Psa3g1001 552 MobiDBLite consensus disorder prediction 526 552 - -
Psa3g1001 552 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Psa3g1001 552 MobiDBLite consensus disorder prediction 460 480 - -
Psa3g1001 552 Pfam B3 DNA binding domain 133 233 IPR003340 GO:0003677
Psa3g1001 552 Pfam Auxin response factor 302 379 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa3g1001 552 MobiDBLite consensus disorder prediction 460 478 - -
Psa3g1001 552 Gene3D - 130 233 IPR015300 -
Psa3g1001 552 CDD B3_DNA 131 232 IPR003340 GO:0003677
Psa3g1001 552 MobiDBLite consensus disorder prediction 504 552 - -
Psa3g1001 552 MobiDBLite consensus disorder prediction 1 26 - -
Psa3g1001 552 MobiDBLite consensus disorder prediction 264 285 - -
Psa3g1001 552 SUPERFAMILY DNA-binding pseudobarrel domain 128 235 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1001 Psa-Chr3 95561915 95564243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1001 26 444 B3 DNA Binding Superfamily AT4G30080 44.989 2.67e-118 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa3g1001 B3 2.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1001 - - mtr:MTR_7g101280 607.06