Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0988 ATGGGAAGAGCTCCATGCTGTGACAAAGCTAGTGTTAAGAAAGGTCCATGGTCTCCTGAAGAAGATGCAAAACTAAAGGATTACATAGAGAAAAATGGAACTGGTGGAAACTGGATTTCTCTCCCCAAAAAAGCTGGTTTGACAAGGTGTGGCAAAAGCTGTTCCTTTTCCTACTCATCAGCAGCAGCATCTTCAAGTCTTTTGAGTGGAAATTCCTTTACTTCAGTACAAGAAAGTTCCACTGGTCCCTCTCAAAGCAATAGCAAAGGCCAGATCAACCATGTCATAGATCAAGAGCTTGTTGAAAAGTATGATAATGATGATGATGATGATGATGTAGCTTTTGTAGAGCAGAATATTAGTGATGTTGATTATCTCTATAATGGTGGAAGTGTTAATCAGTGGATAGAGAAAGAAAATGGATTATGGGAAGAAAATCCATTTGATGAAATTAAAGAGCTAATAAGGACTAATACTACTAGTAGATGCAACAACTTTTTGTTTGATGAGTAA 513 0.3743 MGRAPCCDKASVKKGPWSPEEDAKLKDYIEKNGTGGNWISLPKKAGLTRCGKSCSFSYSSAAASSSLLSGNSFTSVQESSTGPSQSNSKGQINHVIDQELVEKYDNDDDDDDVAFVEQNISDVDYLYNGGSVNQWIEKENGLWEENPFDEIKELIRTNTTSRCNNFLFDE* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0988 170 MobiDBLite consensus disorder prediction 72 93 - -
Psa3g0988 170 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 55 - -
Psa3g0988 170 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 54 IPR017930 -
Psa3g0988 170 Pfam Myb-like DNA-binding domain 14 54 IPR001005 -
Psa3g0988 170 SMART sant 13 64 IPR001005 -
Psa3g0988 170 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Psa3g0988 170 SUPERFAMILY Homeodomain-like 8 58 IPR009057 -
Psa3g0988 170 CDD SANT 16 52 IPR001005 -
Psa3g0988 170 PANTHER OS09G0431300 PROTEIN 1 55 - -
Psa3g0988 170 Gene3D - 11 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0988 Psa-Chr3 92030765 92031758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0988 1 58 MYB Transcription Factor Family AT2G36890 82.759 6.68e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa3g0988 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0988 K09422 - cpap:110810744 110.923