Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0960 ATGGAAACAGTAGCAGCAGCCATAACAAAAAACAACGGTTACGAGTCATTTTGCGTGACAAATGCTAAGAATAATAACATGAAAGTTAACAGTGCTGATCCTTTGAATTGGGGTGTTGCCGCCGAGGCAATGAAAGGGAGTCACTTGGATGAGGTGAAGCGTATGGTGGAGGAGTACAGGAAGCCGGTGGTCCGCCTTGGTGGCGAGACACTGACGATTTCTCAGGTGGCTGCCATTGCCGCACATGATCATGGTGTTAAGGTGGAGTTGTCAGAATCTGCTAGGGCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGGAGAGTATGAACAAAGGCACAGACAGTTACGGTGTTACTACCGGTTTCGGCGCCACCTCTCACCGGAGAACCAAACAAGGTGGTGCTTTGCAGAAAGAACTCATCAGGTTTTTGAATGCTGGAATATTTGGAAATGGAACTGAGTCAAGCCATACACTACCACACACAGCAACAAGAGCTGCCATGCTTGTGAGAATCAACACACTTCTCCAAGGTTATTCAGGAATTAGATTTGAAATCTTGGAAGCTATAACCAAACTCATTAACAACAACGTCACCCCATGTTTACCACTCCGTGGTACAATCACAGCTTCCGGAGATTTAGTCCCTCTTTCTTATATTGCTGGTTTACTAACGGGAAGACCAAATTCAAAAGCTCATGGACCCTCTGGGGAAATTCTTAATGCAAAAGAAGCTTTTCAGTCAGCTGAAATCAATGATGGTTTCTTTGAATTGCAACCAAAAGAAGGTCTTGCACTTGTTAATGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTATTTGAAGCTAACATATTGGCTGTCTTGTCTGAAGTCCTATCCGCTATTTTTGCTGAAGTTATGCAAGGGAAACCTGAGTTTACTGATCATTTGACACATAAATTGAAGCACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTGCTTATGTCAAAGCAGCTAAGAAGTTGCATGAGATGGATCCTTTGCAGAAACCAAAACAAGATAGATATGCACTTAGAACTTCACCGCAATGGCTTGGTCCTCTTATTGAAGTCATTAGATTCTCTACTAAGTCAATTGAGAGGGAGATCAACTCTGTTAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCTTTGCATGGTGGAAACTTTCAAGGAACACCTATTGGTGTATCCATGGATAATACACGTTTGGCTCTTGCGTCAATTGGTAAACTCTTGTTTGCTCAATTCTCTGAACTCGTCAATGATTTTTACAACAACGGGTTGCCTTCGAATCTCTCAGCTAGTAGAAATCCCAGCTTGGATTATGGATTCAAGGGATCCGAAATTGCCATGGCTTCTTATTGTTCTGAGTTACAATATCTTGCAAACCCAGTTACAACTCATGTTCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATATCTTCTAGGAAAACATATGAAGCCATTGAGATCCTTCAACTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAGTTGACTTAAGACATTTGGAGGAGAATTTGAAAAACTCAGTTAAGAACATTGTAAGCCAAGTTGCTAAAAGGACCCTTACAACAGGTGTGAATGGAGAACTTCATCCTTCAAGGTTTTGTGAAAAGGACTTGTTGAGAGTGGTTGATAGGGAGCATGTGTTTGCCTATATTGATGATCCTTGTAGTGCTACATATCCATTGATGCAAAAATTGAGGCAGGTGTTAGTGGATCATGCATTAGTAAATGGTGAATCTGAGAAGAATTTGAACACATCAATCTTCCAAAAGATTGCAACATTTGAGGATGAGTTAAAGACCCTTTTGCCAAAAGAGGTAGAAAGTACTAGGGCTGCATATGAGAGTGGAAATCCAACAGTTCCAAACAAGATAAATGGATGCAGATCTTATCCACTTTATAGGTTTGTGAGACAAGAGTTGGGAACTGGTTTGCTAACAGGAGAAAAGGTCATTTCACCAGGTGAGGAGTGTGATAAGTTGTTCACAGCTATATGTCAAGGAAAGATCATCGATCCTCTTCTTCAATGCTTGGGAGACTGGAACGGTGCTCCTCTTCCAATTTCTTAA 2175 0.4166 METVAAAITKNNGYESFCVTNAKNNNMKVNSADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKEAFQSAEINDGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILQLMSSTFLIALCQAVDLRHLEENLKNSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLRVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALVNGESEKNLNTSIFQKIATFEDELKTLLPKEVESTRAAYESGNPTVPNKINGCRSYPLYRFVRQELGTGLLTGEKVISPGEECDKLFTAICQGKIIDPLLQCLGDWNGAPLPIS* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0960 724 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 24 723 - -
Psa3g0960 724 Gene3D Fumarase/aspartase (Central domain) 271 719 - -
Psa3g0960 724 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 33 713 IPR005922 GO:0005737|GO:0006559|GO:0016841
Psa3g0960 724 Pfam Aromatic amino acid lyase 71 549 IPR001106 -
Psa3g0960 724 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 206 222 IPR022313 GO:0016841
Psa3g0960 724 Gene3D - 23 270 IPR024083 -
Psa3g0960 724 CDD PAL-HAL 69 534 IPR001106 -
Psa3g0960 724 Gene3D - 537 658 IPR023144 -
Psa3g0960 724 PANTHER HISTIDINE AMMONIA-LYASE 24 723 IPR001106 -
Psa3g0960 724 SUPERFAMILY L-aspartase-like 33 723 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0960 Psa-Chr3 90651383 90654725 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0960 1 723 Monolignol Biosynthesis Gene Families AT2G37040 80.939 0.0 1244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0960 K10775 - gmx:100788438 1276.15