Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0935 ATGTTTCATACAAACACAATCTGCATTTTGGTTACTATCATTGTTCTGAGTTCCTTTTCACCACTTGGAATAGCAATGCTGAACTTAACTCTCCCTGGAACTCACCCTGACCCTGAGGCTGTTGCTCATGAAGTTCACAGGAAGGTGAATGCATCAATGGCAAGACGACAAACACTATCATCCGGATCTGCATGCGCCACAGGAAACCCAATTGACGACTGTTGGAAATGCGATCCAGAATGGCCAAACAATCGCCAAAGGTTAGCAGATTGCATAATCGGGTTCGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATACTACGTTGTAACGGATTCATCAGACGATGATCCCGTTACACCAAAGCCTGGTACATTAAGATACGCGGTTATAAAAAACGAACCGTTGTGGATCGTATTTCCTAGTAACATGATGATTAAGCTGAAGCAAGAGTTGATTTTTAATAGCTATAAAACCATTGATGGACGTGGTGCTGATGTTCATATTGTTGGAGGAGGGTGCATTACTTTGCAGTTTATTAGTAATGTTATTATACATAACATTCATGTTCACCATTGTCACCCTTCAGGAAACACAAACGTACGATCTAGTCCAGAACATTTCGGTTACAGAACATTATCAGACGGAGACGGAATCTCCATATTCGGTTCGAAAGACATATGGATCGACCACTGCACACTCTCTCATTGCAAAGACGGACTAATAGACGCAATAATGGGCTCAACCGGAATAACAATATCCAACAACTTCATGTCACACCACAACGAAGTCATGCTCCTCGGACACAGCGACGACTACCTCCCCGACTCAGGAATGCAAGTCACAATCGCGTTCAACCATTTCGGGGAAGAACTCGTTCAGAGGATGCCGCGTTGTAGAAGAGGATACATCCATGTCGTCAACAACGATTTCACTCAATGGGAAATGTATGCCATTGGAGGAAGTGGCGAACCGACTATTAACAGTCAGGGAAATCGTTATGTTGCTCCGGTTAATCTTTTTGCAAAAGAGGTCACTAAGAGAGTTGAAACGGAACAGAATAAGTGGAAAGGATGGAATTGGAGATCTGAAGGTGATGTTATGGTTAATGGTGCTTTCTTTGTTACATCTGGTGAGAGTCTTGAGGTTAAGTATGAGAAAGCTTTTAGTGTTGAACCTCAATCTGCTGATAGGATTGTTTTTCTTACCATGAATGCTGGTGTTCTTGGTAATGCAAGGGACAATAACGTGGGAATGTGGAGCAGAGGACCAAGCAGCAACGATGAGGGCGTTTCAGATTCTGGCCCGGATTACACAGACGATATGTCGGGCAGTGCACTACCGATGCTGTCGTCTTCTTTTACTATGTTGTGCTTCTTGTTGTCTTACAGAGTGATTCTGTTAACAGTGCTTCTATAA 1419 0.432 MFHTNTICILVTIIVLSSFSPLGIAMLNLTLPGTHPDPEAVAHEVHRKVNASMARRQTLSSGSACATGNPIDDCWKCDPEWPNNRQRLADCIIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMMIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHVHHCHPSGNTNVRSSPEHFGYRTLSDGDGISIFGSKDIWIDHCTLSHCKDGLIDAIMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEELVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYVAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMVNGAFFVTSGESLEVKYEKAFSVEPQSADRIVFLTMNAGVLGNARDNNVGMWSRGPSSNDEGVSDSGPDYTDDMSGSALPMLSSSFTMLCFLLSYRVILLTVLL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0935 472 PANTHER PECTATE LYASE 12-RELATED 9 426 - -
Psa3g0935 472 SUPERFAMILY Pectin lyase-like 64 398 IPR011050 -
Psa3g0935 472 Gene3D - 68 410 IPR012334 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Psa3g0935 472 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Psa3g0935 472 Pfam Pectate lyase 149 328 IPR002022 -
Psa3g0935 472 PANTHER PECTATE LYASE 18-RELATED 9 426 IPR045032 GO:0030570
Psa3g0935 472 SMART amb_all 143 340 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0935 Psa-Chr3 88256241 88259199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0935 8 462 Polysaccharide Lyase AT3G53190 72.727 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0935 K01728 - gmx:100775595 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0935 3 88256241 88259199 Psa3g0935 3 88256241 88259199 ECH