Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0909 ATGGATGCATCCGTTAAGCCAGAATCGGAATCCACAACCGTTTTGCTTGATCAGCCTCTCGAAGCACAGGAAATGCCCACGGTGAATGGTTGCATTGTTTACACTCGAGTCAAAAGGTCTCTCAATCCGTGTAATGGTTTTTCCGAGGACGTTGATTGCAAGAGATTCAGGGAAGATGCGGAAACGCCGATTGAATTGGAGAGCGGAGTCGATTGTTGCACGGGGAGTAGGGATGGCGGCGAGTGTGGCGATGGGATGAAGAGTGAGGTTCGTGAGGTTGCGGAAACGGCGTTTAAACGGATTACGAGATCGGCCATGAAAGCTAAAGTCGAGTCCTTCAAGCGGATTACACGATCTGCTATGAAAGAGAAAGTTGAGTCCGATGAGAAGACCATTACTGTGTTAGGACAGAGAGGTGCTGCCGTTGTAAGAGGTAAAGGCGATGGTGCGGTGCCAGGGAGAAATTCGAAGCGGTTTGCACGTTCAGCAATGAAAGAAAAGGGCGAGTCCTGTGAAAAGACGGTGTCTGTGGTAGAACAGCAAGGTGCTGCAGTTGTAAGTGGTACTGGCGATGGTGCGGTGCCAGTGAGATATTTGAAGCGGTTTACACGTTCAGCAATGAAAGAAAAGGGTGAGTCCTGTGAGGAGACGGTGACTGTGGGAGAACAACAAGGTGCTGCAGTTGTAAGTGGTAAAGGCTATGATGCGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGTTTAGCCATGAAAGAAAATGCTGAGTCCTGTGAAGAGACGGTGGCTGTGGTAGAACAACAAGGTGCTGCAGTTGTAAGTGGTAAAGGCGATGATGCGGTGCCAGTGAGAAATTTGAAGCGGTTTACCCGTTCAGCAATGAAAGAAAAGGCAGAGTCCTGTGAGGAGATGGTGACTGTGGTAGAACAACAAGGTGCTGCAGTTGTAAGTGGTAAAGGCGATGGTGCGGTGCCAGTGAGAAATTTGAAGCGGTTTACACGTTTAGCTATGAAAGAAAATGCTGAGTCCTGTGAAGAGACTGTGAATGTGGTAGAACAAGGTGCTGCAGATGTAAGTGGTAAAGGCGATGGTAAGGTGGGAAAGTTCAAGCGGATTACACGATCGGCGGTGAAACTGAAGGTTGAATCTGGTGAGGAGACAGTGACTGAGTTAGCACAGCAGGGTGCCGCCGTTGCAAGTGTTGAAGGTTCAGTGAGGATGTTGAAGCGGATTACACGTTCAGCTTCCTTGAAAGCAAATCCTGAGTCTGGTGAGGAAACGGTGACCAAGTTAGAACAAAAAAGGGCCTCGGTTGTGGGTAATATCAATGGTGTGTTAGCTGCTCCGAGAAACAAGATGGAGTTAAAGATGTCGAAGAAGATTGTGGTTAATAAGATGCCTACAACAGTCAAAGAGCTCTTCCATACCGGATTACTTGATGGCATCTCTGTGGTTTACATTGGCGGCCTTAAGCAGGCTTCAGGATTAAGGGGTGTTATAAGTAATGGGGGAATATTGTGCTCGTGCAGTCTCTGTAAAGGAAGCAGGGTTATTCCACCTTCCCAATTCGCGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATATGCCTTGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCATGCAGGAGAGCTCCCCTGCATGATTTGGAGGCAACAATTCAAAATTTTGTTCGCTCTCCACCCGAGGAAAAATATTTTACTTGTGAAAGGTGCAAAGGATGTTTCCCTTCTTCATGCATGGAAAGAGTGGGACCTATATGCTGTTCTTGTGTAGAATCATGTAAACCTGAAGAAAGTTCGAAGAATGTAGTTGGCAAAAGAATCAGGTCCCCTAGGCCAGTGTCGGTCTCCAAGTCATCCAGTGCTTCTGACCTGTCAATTTCTTCAAAAAGTAAGAGACACGGGAAGAAAAGAACAAAGTCATCAAAAAGGGACAACAGCTCAAATTCTTCCATGAGTGCTTCTGTGCCTATTCTACCCCGGAAGAAAATTACTCCGAAGATGAAAAAGAAGTCACTGTCTGTAAAGTTGAAGACCACTTCAAATTGTTTATCTCCACAAAATAAGAGTCAATGGAAGATAACTAAGAAGGATTTTCGGTTGCACAAGTTAGTTTTCGAGGAAAATGGATTGCCCGATGGAACTGAAGTAGCTTATTATGCAGGCGGCCAGAAATTGCTTGAAGGTTTCAAAATGGGCTATGGAATTTTGTGTAGATGTTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTTCATGAATTATCAATCTCTCTCTCCAAGGACCGAAAATACTCTGCAAATGACAATGATGATTTATGCGTTGTTTGTTGGGATGGTGGAGATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGTGCATCTATATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTCGCATACAATAACAATGCTTTTGCTGCTGGAAGAGTTGAAGGAGTTGATCCTATTGAACAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGGTGCAGAGCTTAGTGGGTGTTCTTTATGCAGGGGTGTTGATTTCAGCAGGTCTGGCTTTGGTCCACGTACAATAATACTGTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGATGGATCACAAGATGGCATTTCTAAAGGAATTGCCAAAAGGTAACTGGCTTTGTTGCAATGATTGCAAGAGAATACATTCTACTTTGAGGAATGTTTTAGTTAGAGGGGCTGAGAGACTCCCTCAATCTCTCTTGGCTCTTATAAAGAAGAAGCAAGGAGAAAAAGGATTGGATCCCATCAATGATATTAACGTGAGTTGGAGGCTTCTTAGTGGAAAAAATGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTCTCTATCTTTCATCAATGCTTTGATCCTATAGTTGATGCAGCCAGCGGCCGTGACCTTATTAGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAGTTTGGAGGAATGCATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGATTCGAATCTTCGGCACTGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGTCATCATGGGAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAAAGGCTACTGGCTTTTATGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACAGTCCATATGGATAGATAAATTCGGGTTTAGCAAGATTAAACCAGACCAGCTTACCAGCTACAGAAGGGACTGCAATCAATTTGTGAACTTCAAAGGGACAAACATGCTTCATAAAATGGTGCCTCCATGTCGAATCATCAATAATCACCCCCCACAAATTTCTCTCGAGAAAAAGTCAATCATGAAAGCGGAAACCTCCTAA 3567 0.4458 MDASVKPESESTTVLLDQPLEAQEMPTVNGCIVYTRVKRSLNPCNGFSEDVDCKRFREDAETPIELESGVDCCTGSRDGGECGDGMKSEVREVAETAFKRITRSAMKAKVESFKRITRSAMKEKVESDEKTITVLGQRGAAVVRGKGDGAVPGRNSKRFARSAMKEKGESCEKTVSVVEQQGAAVVSGTGDGAVPVRYLKRFTRSAMKEKGESCEETVTVGEQQGAAVVSGKGYDAVPVRNLKRFTRLAMKENAESCEETVAVVEQQGAAVVSGKGDDAVPVRNLKRFTRSAMKEKAESCEEMVTVVEQQGAAVVSGKGDGAVPVRNLKRFTRLAMKENAESCEETVNVVEQGAADVSGKGDGKVGKFKRITRSAVKLKVESGEETVTELAQQGAAVASVEGSVRMLKRITRSASLKANPESGEETVTKLEQKRASVVGNINGVLAAPRNKMELKMSKKIVVNKMPTTVKELFHTGLLDGISVVYIGGLKQASGLRGVISNGGILCSCSLCKGSRVIPPSQFAIHACKQYKRAVEYICLENGKSLLDLLRACRRAPLHDLEATIQNFVRSPPEEKYFTCERCKGCFPSSCMERVGPICCSCVESCKPEESSKNVVGKRIRSPRPVSVSKSSSASDLSISSKSKRHGKKRTKSSKRDNSSNSSMSASVPILPRKKITPKMKKKSLSVKLKTTSNCLSPQNKSQWKITKKDFRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGYGILCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKDRKYSANDNDDLCVVCWDGGDLLLCDGCPRAFHKECASISSIPRGDWYCQFCQNMFQREKFVAYNNNAFAAGRVEGVDPIEQITKRCIRIVKDIGAELSGCSLCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLMDHKMAFLKELPKGNWLCCNDCKRIHSTLRNVLVRGAERLPQSLLALIKKKQGEKGLDPINDINVSWRLLSGKNASPETRPLLLEAVSIFHQCFDPIVDAASGRDLIRAMVYGKSVRGQEFGGMHCALLIVNSSVVSAGMIRIFGTDIAELPLVATSNSHHGKGYFQTLFSCIERLLAFMKVKNLVLPAAEEAQSIWIDKFGFSKIKPDQLTSYRRDCNQFVNFKGTNMLHKMVPPCRIINNHPPQISLEKKSIMKAETS* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0909 1188 Pfam Tify domain binding domain 497 552 IPR032308 -
Psa3g0909 1188 Pfam Tify domain binding domain 744 788 IPR032308 -
Psa3g0909 1188 ProSitePatterns Zinc finger PHD-type signature. 807 846 IPR019786 -
Psa3g0909 1188 Gene3D - 993 1162 - -
Psa3g0909 1188 MobiDBLite consensus disorder prediction 613 674 - -
Psa3g0909 1188 PANTHER AUTOIMMUNE REGULATOR 318 1168 - -
Psa3g0909 1188 SUPERFAMILY FYVE/PHD zinc finger 889 950 IPR011011 -
Psa3g0909 1188 SUPERFAMILY FYVE/PHD zinc finger 793 852 IPR011011 -
Psa3g0909 1188 SMART PHD_3 894 951 IPR001965 -
Psa3g0909 1188 SMART PHD_3 806 847 IPR001965 -
Psa3g0909 1188 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 318 1168 - -
Psa3g0909 1188 Pfam PHD-finger 807 848 IPR019787 -
Psa3g0909 1188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 891 953 IPR013083 -
Psa3g0909 1188 CDD PHD1_AIRE 806 846 - -
Psa3g0909 1188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 884 IPR013083 -
Psa3g0909 1188 ProSiteProfiles Zinc finger PHD-type profile. 804 849 IPR019787 -
Psa3g0909 1188 MobiDBLite consensus disorder prediction 624 639 - -
Psa3g0909 1188 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1050 1136 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0909 Psa-Chr3 86515574 86528802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0909 458 1169 PHD Transcription Factor Family AT2G36720 52.941 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa3g0909 TDBD 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0909 - - cam:101512705 1429.08