Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0908 ATGAGATTCAACAGAACCCACTTTTGGCTATCTAGCTTTGTCATCTTTCTCTTTTCTATTATCATTGTTCATTATACCATACCACTTACCAACACCTCTAACACTAGTACTAATAGTTCTCAAGGTAGTTTAAGTTTTCAACTTGCCATATTAAACAAGCTTATAAAACTAAGTGGTGTTCAAGACTTAGTGTCTTTGGTGATATCAAGTATTGCACAACATCATCGTAGGGAGAGACTTAAGGAAAAATGTGACATGGTCGAATGGGCTTCTAAAATACTTTTAGACCGTAATGCGACCGTTGTTTTTACGGTTGATTTAAAGGGTCATGCTAACTTTAGTAGCATTCAGAAAGCAATTGACGCTGTTCCTGAATCTAGCTCTAATACCACTCTTATCATAATCAATTCCGGTGCATACAGAGAGAAAATAGTGGTCGAAGCCAACAAAACAAATTTAATACTACAAGGTCAAGGGTATCTTAATACAATCATAGAATGGAATGACACTTCAAATTCTACTGGTGGAACTTCCTATAGTTACTCATTTGCAGTCTTTGCTTCTAAGTTTTCTGCTTACAACATTAGCTTTAAGAACACTTCTCCTCCACCTTCGCCCGGAGAGGTTGGAGCACAGGCAGTGGCGCTAAGAGTTACTGGCGATCAAGCCGCATTCTATGGATGTGGTTTCTACGGCGGGCAGGACACACTCAATGATGACATCGGAAGACATTATTTTAAGGAATGTTTCATTGAAGGATCCATTGATTTCATATTTGGAAATGCCAGATCACTTTATGAGGATTGCACCATTAACTCAATAGCGAAACAAGATTTCGGTGGTGTTGGTGGATCTATCACAGCTCAAGGAAGACAATCATTGGATGAACAAACAGGATTTTCTTTTGTGAATTGCAACATTGTTGGAAGTGGAAAAGTGTGGCTCGGAAGAGCTTGGGGACCATTTGCCACAGTTGTTTTTTCAACAACAAACATGTCTGATGTTGTAGCTCCTGAGGGATGGAACGATTGGAATGATCCATCTAGAGACAAGAGTGTCTTCTTTGGGGAGTACCGTTGTACAGGACGTGGAGCAAGTTATACATCTAGAGTCTCTTATGCAAGACAACTCAGAGATTATGAAGCAGTTTCCTATATTAATGTTTCATACATTGATGGGAATGATTGGCTTCTTAACTATTTAACTTGA 1209 0.3896 MRFNRTHFWLSSFVIFLFSIIIVHYTIPLTNTSNTSTNSSQGSLSFQLAILNKLIKLSGVQDLVSLVISSIAQHHRRERLKEKCDMVEWASKILLDRNATVVFTVDLKGHANFSSIQKAIDAVPESSSNTTLIIINSGAYREKIVVEANKTNLILQGQGYLNTIIEWNDTSNSTGGTSYSYSFAVFASKFSAYNISFKNTSPPPSPGEVGAQAVALRVTGDQAAFYGCGFYGGQDTLNDDIGRHYFKECFIEGSIDFIFGNARSLYEDCTINSIAKQDFGGVGGSITAQGRQSLDEQTGFSFVNCNIVGSGKVWLGRAWGPFATVVFSTTNMSDVVAPEGWNDWNDPSRDKSVFFGEYRCTGRGASYTSRVSYARQLRDYEAVSYINVSYIDGNDWLLNYLT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0908 402 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 399 - -
Psa3g0908 402 Pfam Pectinesterase 105 394 IPR000070 GO:0030599|GO:0042545
Psa3g0908 402 PANTHER PECTINESTERASE 14-RELATED 11 399 - -
Psa3g0908 402 Gene3D - 97 401 IPR012334 -
Psa3g0908 402 SUPERFAMILY Pectin lyase-like 101 397 IPR011050 -
Psa3g0908 402 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0908 Psa-Chr3 86512640 86514356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0908 95 397 Carbohydrate Esterase AT1G05310 55.556 3.20e-123 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0908 - - gmx:100802034 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0908 3 86512640 86514356 Psa6g3669 6 319143806 319146192 PCT