Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0892 ATGGCGGTTTCTCCGTCCGTCGCTACTACTCCGGCTTCTCTTTACGTCGGCGATCTTCATCCCGATGTCTCCGACGCTCAGCTTCGAGAAGCGTTCTCCGATTTCAATACTCTCGCTTCCGTTCGCGTTTGCAGAGACTCTTCCACCGGAAAGTCACTCTGTTATGGCTACGTCAACTTCCTCTCTCCTCAAGACGCAATTCGTGCGATTGAGCTGAAGAATCATTCTATCTTGAATGGAAAAGCGATAAGGGTCATGTGGTCGCGTCGTGATCCTGATGCAAGGAAAAGTAGCATAGGGAATGTGTTTGTTAAGAACTTAGCTGAATCAATAGATAATTCTGGATTAGAATATATGTTTAAAAAGTATGGGAATATTTTGTCGAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAAACAGAGGAATCTGCAAATACTGCTATTGAGAAGCTGAATGGCTCTACTATCCATGATAAGCAGATATATGTTGGGAAGTTTGTCAAGAAAAGTGACCGTGTAATGTCTGGCCCTGATGCTAGATATACAAACCTGTACATGAAGAATTTGGACTTAGATATTACAGAAACACTTCTGCAGGAAAAGTTTTCCTCTTTTGGGAAAATCATTAGCTTGGCTGTTGCAAAGAACAGCAATGGGATGTCAAAGGGTTTTGGCTTTGTGAACTTCGATAAACCAGATGATGCTAAAAGGGCAATGGAAGCGATGAATGGATTGCAACTTGGTTCAAAGATTCTGTATGTATCCAGGGCACAGAAGAAGGCTGAGCGTGAGCAGATCTTGCATCAGCAATTCGAAGAGAAACGAAAGGAGCAAGTCTTGAAATATAAGGGCTCAAACATTTATGTGAAGAATATAGATGACACGGTAAGTGATGAAGGACTGCGGGATCATTTTTGTGCATGCGGTACTATAACTTCTGCAAAAGTTATGCGAGATGACAAAGGGATAAGCAAAGGATTTGGTTTTGTATGCTTTTCCACTCCTGAGGAAGCAAATAAAGCTGTGAACACTTTTCATGGATTCATGTTCCATGGTAAACCCCTATATGTTGCTCTTGCTCAGAAGAAAGAGGTCAGACAGGTACAGTTACAGCTCCAGTACGCACCGCAAACTGCAGGACTAGCTGGGCCATCAACTGCCATTGTCCCTCGGGGATATCCTCCTTTCTACTACACAGCTACTGGTGTTGTTTCACATCCTCTTCCTCGGGCTGGGCTAATGTATCAGCCTATGTCATTGAGACCAGGATTGAGGGCTAATGGCTCTGCACCTCCTGCTAGATCATTCCAACAGTCACCTGCACCTGTTGTTTCTAACAATACTAGGCAGCATAGGCAAAATAGGGGCAGGATGAATGGCCATGCAGTATCACAGGGAAAGACTCACGATGGTACATTTATGCCACAGTCACAGCAGGCTTCTCAGTCAGCGATATCTTCAAGAGAGTCATGTACTCAGCAGAAAACCAGACAGGCAAAGTATGTACCTAGTGGACGCCCCCAGGAGATGGAAAAAGGATCTGGATTCATATCTGGTGGTCCAAACTCTGGTAGAGGCTCACAAGTATCAGAAATGCTGCATCTCATGGTTGCTAATGCTACTCCAGAGCAGCAGAAAGAGATACTTGGTGAGCATCTATACATGCTTGTCCAGAAAATCAAGCCTAACCTGGCAGCAAAGATTACTGGCATGCTATTGGAGATGGACAGTGCTAAACTGCTGGCTCTCATGGAATCACCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTTTCCAGCTGCTGAAGAACTCTAAAGCTAAAGTTTCTGGACTGGATGTACTTCATTCGAATTTCCTTTCATCTGAGGTTGCAGTGAACTGA 1908 0.4429 MAVSPSVATTPASLYVGDLHPDVSDAQLREAFSDFNTLASVRVCRDSSTGKSLCYGYVNFLSPQDAIRAIELKNHSILNGKAIRVMWSRRDPDARKSSIGNVFVKNLAESIDNSGLEYMFKKYGNILSSKVVMSEDGKSKGYGFVQFETEESANTAIEKLNGSTIHDKQIYVGKFVKKSDRVMSGPDARYTNLYMKNLDLDITETLLQEKFSSFGKIISLAVAKNSNGMSKGFGFVNFDKPDDAKRAMEAMNGLQLGSKILYVSRAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDTVSDEGLRDHFCACGTITSAKVMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQKKEVRQVQLQLQYAPQTAGLAGPSTAIVPRGYPPFYYTATGVVSHPLPRAGLMYQPMSLRPGLRANGSAPPARSFQQSPAPVVSNNTRQHRQNRGRMNGHAVSQGKTHDGTFMPQSQQASQSAISSRESCTQQKTRQAKYVPSGRPQEMEKGSGFISGGPNSGRGSQVSEMLHLMVANATPEQQKEILGEHLYMLVQKIKPNLAAKITGMLLEMDSAKLLALMESPESLSAKVEEAFQLLKNSKAKVSGLDVLHSNFLSSEVAVN* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0892 635 SMART rrm1_1 192 264 IPR000504 GO:0003723
Psa3g0892 635 SMART rrm1_1 13 86 IPR000504 GO:0003723
Psa3g0892 635 SMART rrm1_1 101 173 IPR000504 GO:0003723
Psa3g0892 635 SMART rrm1_1 295 367 IPR000504 GO:0003723
Psa3g0892 635 Gene3D - 274 380 IPR012677 -
Psa3g0892 635 Gene3D - 181 273 IPR012677 -
Psa3g0892 635 PANTHER POLYADENYLATE-BINDING PROTEIN 529 620 - -
Psa3g0892 635 PANTHER POLYADENYLATE-BINDING PROTEIN 6 509 - -
Psa3g0892 635 Coils Coil 263 283 - -
Psa3g0892 635 MobiDBLite consensus disorder prediction 483 510 - -
Psa3g0892 635 CDD RRM2_I_PABPs 99 174 IPR045305 -
Psa3g0892 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Psa3g0892 635 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Psa3g0892 635 CDD RRM4_I_PABPs 293 371 - -
Psa3g0892 635 SUPERFAMILY PABC (PABP) domain 542 620 IPR036053 GO:0003723
Psa3g0892 635 SUPERFAMILY RNA-binding domain, RBD 190 375 IPR035979 GO:0003676
Psa3g0892 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Psa3g0892 635 Pfam Poly-adenylate binding protein, unique domain 546 610 IPR002004 GO:0003723
Psa3g0892 635 MobiDBLite consensus disorder prediction 440 454 - -
Psa3g0892 635 Gene3D - 2 98 IPR012677 -
Psa3g0892 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Psa3g0892 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Psa3g0892 635 SMART rrm2_1 192 264 IPR003954 GO:0003676
Psa3g0892 635 SMART rrm2_1 295 367 IPR003954 GO:0003676
Psa3g0892 635 SMART rrm2_1 101 173 IPR003954 GO:0003676
Psa3g0892 635 MobiDBLite consensus disorder prediction 435 454 - -
Psa3g0892 635 PANTHER RNA BINDING PROTEIN 6 509 - -
Psa3g0892 635 PANTHER RNA BINDING PROTEIN 529 620 - -
Psa3g0892 635 Gene3D - 100 180 IPR012677 -
Psa3g0892 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Psa3g0892 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Psa3g0892 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Psa3g0892 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Psa3g0892 635 MobiDBLite consensus disorder prediction 483 518 - -
Psa3g0892 635 CDD RRM1_I_PABPs 13 92 - -
Psa3g0892 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Psa3g0892 635 Gene3D - 536 616 - -
Psa3g0892 635 SUPERFAMILY RNA-binding domain, RBD 12 179 IPR035979 GO:0003676
Psa3g0892 635 SMART poly_2 550 613 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0892 Psa-Chr3 84227010 84232223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0892 12 633 Eukaryotic Initiation Factors Gene Family AT2G36660 52.077 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0892 K13126 - gmx:100779547 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0892 3 84227010 84232223 Psa3g0892 3 84227010 84232223 ECH