Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0883 ATGATTGATGAATCAAATAGGAGATGTTTTCGCTGTGTCTTTCTTCTTTGCCTTTTCCTCTGTCGTTATACTTGTTCGCAAAAGACTTGTCCAAACTGTGGTTCGATGAAAGTTCCATATCCGTTGAGTATAGAATCGAACTGTGGCGATCCGTACTATAGGCTTCGTTGTGATCCTCGTTCTCAAAAGCTTTACTTTGACACTCTCAATGGAGGTTCCTATGTTGTACTCAGAGTCATGTCTTCGATCCAGCGGATCGTGGTGCAGGCACCACCTTGGTTACCTGGTTCATGTGTCACACAAGACATGCTGGTAAGTAACGGAATTTGGTTAAATCAGTCGCTTCCTTTCAACATAACTTCGTCCAACACAGTGTTCCTCTTCAACTGTTCGCCTCGTCTCTTGGTTTCTCCTCTTAACTGTACCGCTTCTAGTATATGTCATCGTTACTTGGAAAATTCAGGTCACGTTGACGTAAAGCGAGCGCACGGGTGTGCGAGTGGTCTTCGTCCCTGTTGCACCTTTGTTGCTGGTGGCATGCCTTCGGCTTACAAGATTCGCCTTCACAGTTCCGGTTGCAAAGCGTTCAGAAGCATCCTTCATTTGGACCAAGACAAACCTCCTAGTCAGTGGGAGGAAGGTCTAGAGATTCAATGGTCTCTTCCACCCGAACCTGTATGCAGGAGACAAAGCGATTGTTCTAGAGACTCTAAGTGTTTCGCTTCTAGTAGAGACAAACTCTTCCGCTGTTTTTGTAATCGAGGATTCCATTGGAACCCTTCTGCAACAACCTGTGAAAAATACAAGAGAAAATCCAAATGGAAAACCAGCTTGATTGTCTCAATAGCGGTTATTTCTTTTTTCTCATTCACAGTGGTTCTTGTCGTAATCACAAAGTCCTTCAAACACTCTAAGATCGTCAAGGAAAGAGAAACTGCGATGAAATCGAGCATTGGAGTGGAGAAGCCTTACAAAATGTTTCAACTGAAAGAGTTGAAGAAAGCGACGAAATGTTTTTCGCACGACAGGATCTTAGGAAGTGGCGGCTTCGGGGAAGTTTACAAAGGCGAACTACAAAACGGAACACTTGTAGCTGTCAAGAAAGCTAGAGTTGGCAACCTTAAAAGCACCCAACAAGTGCTTAATGAAGTTTCAATACTATCTCAAGTCAATCACAAGAACCTAGTCAGACTCTTAGGCTGCTGTGTGGAATCTGAGCAACCATTGATGATCTATGAGTATATCTCGAATGGGACTCTCTACGACCATATTCACGAGCTTTTGACATCAAAGAAAGCAATAGACTTTTCTCGCGATCAAGACGACGTTAACCTCGTAATTCATGTGAGTCAATATGCAAGCAATGGTGCAATCATGCAAGTGGTTGATCAAAGGCTTGTTCTATCTATGGAACCCTTAAATGATAAATTGATCACAAGCATCAAACTCTTTTGGGAGCTTGCACATGATTGTCTTAGAGAGAAGAGAGTTGAAAGGCCTTGTATGAGGGATATTGTTGAAAGACTCTTATGCATAATTAGGATTGAAGATCAAGACTGA 1560 0.4276 MIDESNRRCFRCVFLLCLFLCRYTCSQKTCPNCGSMKVPYPLSIESNCGDPYYRLRCDPRSQKLYFDTLNGGSYVVLRVMSSIQRIVVQAPPWLPGSCVTQDMLVSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTASSICHRYLENSGHVDVKRAHGCASGLRPCCTFVAGGMPSAYKIRLHSSGCKAFRSILHLDQDKPPSQWEEGLEIQWSLPPEPVCRRQSDCSRDSKCFASSRDKLFRCFCNRGFHWNPSATTCEKYKRKSKWKTSLIVSIAVISFFSFTVVLVVITKSFKHSKIVKERETAMKSSIGVEKPYKMFQLKELKKATKCFSHDRILGSGGFGEVYKGELQNGTLVAVKKARVGNLKSTQQVLNEVSILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLYDHIHELLTSKKAIDFSRDQDDVNLVIHVSQYASNGAIMQVVDQRLVLSMEPLNDKLITSIKLFWELAHDCLREKRVERPCMRDIVERLLCIIRIEDQD* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0883 519 Pfam Protein tyrosine and serine/threonine kinase 342 428 IPR001245 GO:0004672|GO:0006468
Psa3g0883 519 Gene3D Phosphorylase Kinase; domain 1 292 414 - -
Psa3g0883 519 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 21 425 - -
Psa3g0883 519 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 426 518 - -
Psa3g0883 519 ProSiteProfiles Protein kinase domain profile. 339 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0883 519 ProSitePatterns EGF-like domain signature 2. 250 265 IPR000742 -
Psa3g0883 519 Pfam Wall-associated receptor kinase galacturonan-binding 30 88 IPR025287 GO:0030247
Psa3g0883 519 SUPERFAMILY Protein kinase-like (PK-like) 310 428 IPR011009 -
Psa3g0883 519 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Psa3g0883 519 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 425 IPR045274 GO:0007166
Psa3g0883 519 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 426 518 IPR045274 GO:0007166
Psa3g0883 519 Gene3D Transferase(Phosphotransferase) domain 1 423 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0883 Psa-Chr3 82653207 82655081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0883 426 519 Receptor kinase-like Gene Family AT5G02070 32.979 3.18e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa3g0883 PK_Tyr_Ser-Thr 1.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0883 - - mtr:MTR_7g103180 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0883 3 82653207 82655081 Psa3g0883 3 82653207 82655081 ECH