Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0874 ATGGATTGGAATACTGATACCACAGTACCCTTTGTTCCTCCTCCAGGTTCTTCTTTAAGCTTCTTCTACAACTATAACAACTACAATTATTCTGGAATTGAAGCGAGTGAAGCGGCATTGGGTGAGACTCAACAAAGGTTGCTTCCTGTAATTGATGATGAAACGAACAAGATTAATAATGGAAAAGATTACCGAGAGAAGAAGAAGACCAAGAACAAGAAGAATAAATTAACAAGTAACCAAGTTGATGCATTGGAGAGGAGTTTTCATGAAGAAATAAAATTAGACCCTGAAAGAAAGATGAAGCTTTCTGCTGAGTTAGGGCTTCAACCTCGCCAAGTCGCTGTCTGGTTCCAAAATAGGCGTACTAGGTGGAAGACTAAGCAGCTTGAACACTCCTATGATGTGCTGAAACAAGAAAATCAGAAACTTCAAGAAGAGGTTATGGTGTTGAAGGAAAAGCTAAAAGAGAAATCTGATTGCAGGACACAAACATTTGGCGATGAAACAGTAGAAAGTCCATTAGAAGGGTTGGGATGGAGAGAGATTGAAGGGTATAAACCATATCCAAATTCCCACAATCAACAAGGATCAACAAGTAGCATTCAACAAGCTGCAGAGGGATACATCAACAGTTCTTTCATTGTTGAAGATTTTGACTCAGTTTCATTGCATCAGGAATGTCACTGGCCTGAGTTACCTTATTATCCATGA 714 0.3922 MDWNTDTTVPFVPPPGSSLSFFYNYNNYNYSGIEASEAALGETQQRLLPVIDDETNKINNGKDYREKKKTKNKKNKLTSNQVDALERSFHEEIKLDPERKMKLSAELGLQPRQVAVWFQNRRTRWKTKQLEHSYDVLKQENQKLQEEVMVLKEKLKEKSDCRTQTFGDETVESPLEGLGWREIEGYKPYPNSHNQQGSTSSIQQAAEGYINSSFIVEDFDSVSLHQECHWPELPYYP* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0874 237 SMART HOX_1 70 132 IPR001356 GO:0003677
Psa3g0874 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 232 IPR045224 GO:0003700
Psa3g0874 237 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Psa3g0874 237 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Psa3g0874 237 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Psa3g0874 237 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 232 - -
Psa3g0874 237 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Psa3g0874 237 Coils Coil 127 161 - -
Psa3g0874 237 Pfam Homeodomain 71 126 IPR001356 GO:0003677
Psa3g0874 237 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Psa3g0874 237 Gene3D - 63 136 - -
Psa3g0874 237 CDD homeodomain 77 129 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0874 Psa-Chr3 82072430 82074004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0874 1 151 Homeobox Transcription Factor Family AT5G03790 46.951 6.90e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa3g0874 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0874 - - gmx:100806798 189.504