Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0873 ATGGATTGGAATACCGAGTCCACAATGCCCTTTGTTCCTCATCCAGACTCTTCTTTAAGCTTCTTCTACAACAATAACATCAGAAACCCTTATTCAGGAATGGAAGTGAGTGACATGAATACTAATGGAAATGGTTACCTTGAGAATAAGAAGAAGAGACTGACAAGTAACCAGATTGATTTTCTGGAGAGGTGCTTTCAAGAAGATATGAAGTTAGATTCTGAAAGGAAAATGAATCTTTCAAGAGAGTTAGGGCTGCAACCTCGTCAAATTACTGTTTGGTTTCAGAACAGGCGTACTAGGTTGAAGACTAAGCAACTTGAACATTCCTATGATGTGCTTAAGCAAGAGAATCAGAAACTTCGAAAAGAGGTTATGGAGTTGAAGGAAAAACTAAAAGAGAAAGCTCATTGTAGGACACAAACATATGGTGAAGAGACAATACAAAACATATTAGAAGGGCTACCATGCAGAAATATAGAAGGAGAGACATATCCATGTTTCAATAAGACAGAAACAACAACAAGTAGCATTCAACAAGCTGCAGAGGGATGTGCCCACAGTTCTTTCATTGTTGAAGATTTTGACTCAGTTTCATTGTTTCATGAATGTCACTGGCCTAAGTTACCTTACTATCCTTAA 642 0.3769 MDWNTESTMPFVPHPDSSLSFFYNNNIRNPYSGMEVSDMNTNGNGYLENKKKRLTSNQIDFLERCFQEDMKLDSERKMNLSRELGLQPRQITVWFQNRRTRLKTKQLEHSYDVLKQENQKLRKEVMELKEKLKEKAHCRTQTYGEETIQNILEGLPCRNIEGETYPCFNKTETTTSSIQQAAEGCAHSSFIVEDFDSVSLFHECHWPKLPYYP* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0873 213 Coils Coil 104 138 - -
Psa3g0873 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 208 IPR045224 GO:0003700
Psa3g0873 213 SUPERFAMILY Homeodomain-like 32 107 IPR009057 -
Psa3g0873 213 Pfam Homeodomain 50 103 IPR001356 GO:0003677
Psa3g0873 213 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 208 - -
Psa3g0873 213 CDD bZIP 98 133 - -
Psa3g0873 213 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Psa3g0873 213 SMART HOX_1 47 109 IPR001356 GO:0003677
Psa3g0873 213 CDD homeodomain 50 106 IPR001356 GO:0003677
Psa3g0873 213 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Psa3g0873 213 Gene3D - 47 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0873 Psa-Chr3 81795143 81796238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0873 1 132 Homeobox Transcription Factor Family AT5G03790 42.500 1.90e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Psa3g0873 Homeodomain 1.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0873 - - ccaj:109798071 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0873 3 81795143 81796238 Psa3g0873 3 81795143 81796238 ECH