Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0872 ATGTTTTTTCCAATGGAGCTTTGTCAAATTGAGCCTGGTCAGAGGTACTCCAAAAGATTGAATGAAGAGCAAGTAACGGCTCTTTTAAGGGCTACTTGTCAGCGTCCTCCACAAAGAGAAAATGATATTAAACATATTGTGAAGCAGCACCATTTCAACACTGACAACGTTGTGAAAGAGTTTGGCATAAATGTTAGGGAAGAGCTCGCATTGGTTGATGCCCGTGTTTTGCCTCCTCCGACGCTCAAATATCATGGAAGTGGAGGTGGATCAAAAATTGACCCTCAGATGGGTCAATGGAATATGATTAATAAGAAAATGGTTGATGCTGGCAAGGTGCAATTTTGGACTTGCATTTGCTTTGCAAGTAGAATGGACCCAACTCAATTTTGTGCTGAGTTGGTTAATATGTGTCGAAGCAAGGGAATGGATTTCAACCCAGATCCTCTGATACCTATATACCCTGGGAATCCAAATCAAATCGAAAGAGAGCTTGTTGAACTTCAAAAGAAGTGCAAGGCAACACTTGATAGGACAAAGCAGGCGGGAAGACTGCAATTGTTGATCATAATTTTACCGGATTTTAAGGGTAAATCATATGATAGAATAAAGCGTGTATGTGAGACTGAATTGGGAATAGTTTCTCAATGCTGTCAACCGCGACAAGCCATAAAGATGAATAAACAATATCTTGAAAATTTGGCGTTAAAGATCAATGTTAAGTCTGGAGGCCGTAACACGGTGTTGAATGATGCCTTTGAGAAAAGAATTCCTCTAGTAACTGATATGCCAACAATAATATTTGGTGCTGATGTAACACATCCTCAACCGGGAGAAGACTTGAGTCCCTCTATAGCTGCAGTGGTGGCATCAATGGACTGGCCTTGGGTCACAAGATACAGAGGAATTGTTTCTGCCCAGGTTCACCGCGAGGAGATAATTCAAGATCTCTTTAAAGTAATAGAGGATCCTCAGAAGGGAAATCGGCCTGCTGGAATGATAAGGGAGTTGCTTGTGGCTTTCTTTAAATCTACTGGGTGTAAGCCAAAGAGGATTATATTTTACAGAGATGGGGTAAGTGAGGGCCAGTTCAGTCAGGTTTTGCTTTACGAGATGGATGCAATTCGGAAGAAGCCTTCTGATACTATTTCTTATTCATTCAGTATATTGCGAGGTCCTCCGATCTGTCTCAATAGTTCCTCCTGCCTATTATGCACATTTGCTAGCTTTCCGCGCTAG 1239 0.4165 MFFPMELCQIEPGQRYSKRLNEEQVTALLRATCQRPPQRENDIKHIVKQHHFNTDNVVKEFGINVREELALVDARVLPPPTLKYHGSGGGSKIDPQMGQWNMINKKMVDAGKVQFWTCICFASRMDPTQFCAELVNMCRSKGMDFNPDPLIPIYPGNPNQIERELVELQKKCKATLDRTKQAGRLQLLIIILPDFKGKSYDRIKRVCETELGIVSQCCQPRQAIKMNKQYLENLALKINVKSGGRNTVLNDAFEKRIPLVTDMPTIIFGADVTHPQPGEDLSPSIAAVVASMDWPWVTRYRGIVSAQVHREEIIQDLFKVIEDPQKGNRPAGMIRELLVAFFKSTGCKPKRIIFYRDGVSEGQFSQVLLYEMDAIRKKPSDTISYSFSILRGPPICLNSSSCLLCTFASFPR* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0872 412 ProSiteProfiles Piwi domain profile. 187 377 IPR003165 GO:0003676
Psa3g0872 412 Pfam Piwi domain 188 378 IPR003165 GO:0003676
Psa3g0872 412 Pfam Argonaute linker 2 domain 38 84 IPR032472 -
Psa3g0872 412 Gene3D - 257 389 IPR036397 GO:0003676
Psa3g0872 412 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 378 - -
Psa3g0872 412 Gene3D - 76 251 - -
Psa3g0872 412 SUPERFAMILY PAZ domain 2 52 IPR036085 GO:0005515
Psa3g0872 412 SMART Piwi_a_2 187 401 IPR003165 GO:0003676
Psa3g0872 412 PANTHER ARGONAUTE1 2 378 - -
Psa3g0872 412 SUPERFAMILY Ribonuclease H-like 177 379 IPR012337 -
Psa3g0872 412 Pfam Mid domain of argonaute 95 170 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0872 Psa-Chr3 80278779 80282745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0872 2 377 Eukaryotic Initiation Factors Gene Family AT1G48410 59.367 2.84e-154 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0872 K11593 - vvi:100258447 525.013