Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0868 ATGATTAAGGATGCAATAGTGTCGTTGAAGGAGAAGAACGGTTCGAGCCAATACGCGATTGTGAAATTCATTAAAGAGAAACAGAAACAGCTTCCTGGAAACTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGCTAAGGTTAAAGGTTCGTTCAAGCTTTCTGCAGCAGCTAAGAAGCCCGCAGTTGCCAAGCCAAAGTCAAAACCAGGTTAA 237 0.4135 MIKDAIVSLKEKNGSSQYAIVKFIKEKQKQLPGNFKKLLLQNLKKNVASGKLAKVKGSFKLSAAAKKPAVAKPKSKPG* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0868 78 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 63 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa3g0868 78 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 1 77 - -
Psa3g0868 78 SMART h15plus2 1 58 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa3g0868 78 Gene3D - 1 76 IPR036388 -
Psa3g0868 78 SUPERFAMILY "Winged helix" DNA-binding domain 1 72 IPR036390 -
Psa3g0868 78 Pfam linker histone H1 and H5 family 1 62 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa3g0868 78 CDD H15 1 62 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa3g0868 78 PANTHER HISTONE H1 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0868 Psa-Chr3 80224550 80224823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0868 1 74 Single Myb Histone (SMH) Gene Family AT1G17520 37.662 1.26e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0868 K11275 - pvy:116120946 93.2041