Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0864 ATGGATTGGAATATTATTGAGAACACAAGACCCTTTGTTCCTCATCCAGAATCTTCCTTATCCTTCTTCTACAACAACAACAACCCCTATTCAGGAATGGAAATGGGCCAAGCTGCACTGGGTGAAACACATCAGAGGTTGCTTCCAGCAATGGATGAAATGAACATTAATGGAAATAACTACAAAGAGAAGAAGAAGAGATTAACAAGTAACCAGATTGATTTACTGGAGAGGTGTTTCCAGGAGGAAATAAAGTTAGAGCCTGAAAGGAAAATGAAGCTTTCAAGAGAGTTAGGGCTTCAACCTCGTCAAATTGCGGTTTGGTTTCAAAACAGGCGTACTAGGTGGAAGACTAAGCAGCTTGAACATTCCTATGATGTTCTTAAACAAGAATTTGATGCTGTATCAAGAGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAAGGAAAGCTAAAAGAACAAGCTACCTTCAGGACACAATCCTATGTTGAAGAAACAGTAGAAAGCACATCAGAAGAGAAAAAGACAGATGATTCAGGAAGGACAGTGAGCTGA 561 0.3939 MDWNIIENTRPFVPHPESSLSFFYNNNNPYSGMEMGQAALGETHQRLLPAMDEMNINGNNYKEKKKRLTSNQIDLLERCFQEEIKLEPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHSYDVLKQEFDAVSREKQKLQEEVMKLKGKLKEQATFRTQSYVEETVESTSEEKKTDDSGRTVS* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0864 186 Coils Coil 125 152 - -
Psa3g0864 186 MobiDBLite consensus disorder prediction 163 186 - -
Psa3g0864 186 CDD homeodomain 62 120 IPR001356 GO:0003677
Psa3g0864 186 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Psa3g0864 186 MobiDBLite consensus disorder prediction 169 186 - -
Psa3g0864 186 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Psa3g0864 186 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Psa3g0864 186 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 177 - -
Psa3g0864 186 SMART HOX_1 62 123 IPR001356 GO:0003677
Psa3g0864 186 Coils Coil 51 71 - -
Psa3g0864 186 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Psa3g0864 186 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Psa3g0864 186 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 177 IPR045224 GO:0003700
Psa3g0864 186 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Psa3g0864 186 Gene3D - 57 129 - -
Psa3g0864 186 SUPERFAMILY Homeodomain-like 51 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0864 Psa-Chr3 78945395 78947755 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0864 1 149 Homeobox Transcription Factor Family AT5G03790 52.121 7.37e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa3g0864 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0864 - - gmx:100807872 219.164