Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0860 ATGGAGTTTTGGGGTGTTGAGGTAAAAAGTGGGAAATCACTCAAGGTTGACCCAGAAGAAAACAAGATTATCCATCTTTCATCGGCATGTCTGGGGGAGGTCAGCAAGGATAAAGGGAATGAACCAGTATCCCTATATGTGAAGTTTGGTGATAAGAAGGTTCAACTTGGAACACTATCTTCAGAAAAATTTCCTCAGACATCTTATGATTTGGTATTTGAGAAGGCATTTGAGCTATCCCATAACTGGAAATATGGAAGTGTCTTCTTTACTGGATATAAGTTTGAATCTGCGAACGAAGATATTCCAATTAACGTTGCTGCCAATGGGAAACATGAGTTTGAGGTGAAGAGTGATGCCAAACCCCATGTTAATGGAACTAAACAAAAGAAAACATCGGATCAAATAAAGAATGAAAAGGATGTTAGTGATCAAGATGACGAAGAATCATCTGAATCTGAATCTGACTCTGATGAGGATTCTGGTGAAGAGAAGCCTGCCACCAATGGACATATTGGAATTAGTGAAGATGACGATGATAGCGATGAGGACGATGATTCTGATGATTCTGATGAGGAGGAGACACTGGTGAAGGCTGAAGGGAGCAGTAAGAGAGTTCATGAATCTTCAAAGAAAACTCCTGTACCTGTGAAGAAGGCAAAGTTTGTTACTCCTGAGAAGAATGGTGGCCCTAGTGGTAGTGTCCATGTTGATACTCCTTACCCTAAGCAGGCTCTAAAATCAGCTAATAACAAGCAGCAGACTCCAAAGTCAAATGGGGATTACAGCTGCAAACCTTGTAACAGGTCATTTAAGAGTGAAGATGCCCTGGATCATGTATACTCTTCTATTGTGTTTGCTTTTGCTCGGGCAAGTGGTCTTGACAACACTGTTACAGAAGTTGGCCCACCTTTCGATTGGAGAATTATGAGTCCTTATGAGGACGAAAGAATATGTGACAAGTATGGAACTTGTACTATTGCTTTCTATGAATGCGCTTTTCCACCATGGGCATTTGTCTCCCCTTCATTTCTTTTGAACCCGGAAGCTCATGATGTTGTTTGTGATATCGACGATATAGTGAAGGGAAGATATGCCGATTTATTCTCCAAGTATTGGACAAAGGGTCATTTTCTGTTGGGGAACTGTACTTATGTATATAGTGAAAAATATCTCCCCGGTGAGGCTCGATCTAATTGCCCTCATTTATTGACGGGATCCGGTTCTCGTTCTACCAAAGGTCGCAAACCTCCTCCGTTGGACGAGGACTACCCTTATTTGGTTGACCTTTTGGGCATGTTCTGGATGAAGAACTGGCTACTCTGGCTCGATATACTTGACGGGCCTCGACTACTTTGGCCTTTGGCGCGTCTGGTCACTAAAAGGATTTTTGGTTCGACTGACACCATACAAAAATAA 1419 0.4207 MEFWGVEVKSGKSLKVDPEENKIIHLSSACLGEVSKDKGNEPVSLYVKFGDKKVQLGTLSSEKFPQTSYDLVFEKAFELSHNWKYGSVFFTGYKFESANEDIPINVAANGKHEFEVKSDAKPHVNGTKQKKTSDQIKNEKDVSDQDDEESSESESDSDEDSGEEKPATNGHIGISEDDDDSDEDDDSDDSDEEETLVKAEGSSKRVHESSKKTPVPVKKAKFVTPEKNGGPSGSVHVDTPYPKQALKSANNKQQTPKSNGDYSCKPCNRSFKSEDALDHVYSSIVFAFARASGLDNTVTEVGPPFDWRIMSPYEDERICDKYGTCTIAFYECAFPPWAFVSPSFLLNPEAHDVVCDIDDIVKGRYADLFSKYWTKGHFLLGNCTYVYSEKYLPGEARSNCPHLLTGSGSRSTKGRKPPPLDEDYPYLVDLLGMFWMKNWLLWLDILDGPRLLWPLARLVTKRIFGSTDTIQK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0860 472 Gene3D Nucleoplasmin core domain 1 100 - -
Psa3g0860 472 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 279 - -
Psa3g0860 472 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 279 - -
Psa3g0860 472 MobiDBLite consensus disorder prediction 196 215 - -
Psa3g0860 472 MobiDBLite consensus disorder prediction 115 144 - -
Psa3g0860 472 MobiDBLite consensus disorder prediction 176 195 - -
Psa3g0860 472 MobiDBLite consensus disorder prediction 115 237 - -
Psa3g0860 472 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Psa3g0860 472 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0860 Psa-Chr3 78331385 78339310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0860 1 99 C2H2 Transcription Factor Family AT5G03740 54.545 1.63e-30 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0860 - - ccaj:109796568 302.753