Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0856 ATGGAATCCAATGGACTAGGTGGTGGAATATTTCCTAGTTCTACCATAAACAATGGATTTATAGGTGTAGAAAACCCTTCAAAACAACAACAAAATTCTCACACTTTGCATCATCATCATCATCATCACCAAATGGTTTCCTATGATCAACCCCATCCATCAATAAAACAAACCTATCCTTCTTACTCATCAAAATCCATCATGAGCAACAAGGCACATCAACAAATCAACCTCAGTGATGAAGATGAGCCGTGTTTTGGAGCAGATGAAGCCTCTGGTGGTGGTGATCCAAAGAGGAAAGGATCACCATGGCATAGAATGAAATGGACAGATACAATGGTAAGGCTCTTGATAATGGCTGTTTATTACATCGGTGATGAAGCGGGTACTTCGGAGATAGGGGTTGATAATAAAAAGAAAGTGAGTGGCTTGTTACAGAAGAAAGGTAAATGGAAATCGGTTTCTAAAGGGATGATGGAGAAAGGATACTATGTTTCGCCTCAACAATGTGAAGACAAGTTCAATGATTTGAACAAAAGGTACAAAAGGGTTAACGATATTGTCGGAAAAGGAACAGCTTGTAGGGTTGTTGAGAATCAAAGCTTGTTGGATAGTATGGATTTGTCTACCAAACTTAAAGATGAAGCTAGAAAGCTTTTGAATTCTAAGCATCTTTTCTTTAGAGAAATGTGCGCATATCATAATAGTTGTGGCCATGGGAACAATACTTTGCAGCAGCAACAGTCTTCGAACGAGACTCAACCACAGCAGCAGCATCCACCACAGCAGCAACAACAGCAACAACCTCAGCAGGAGCAGCAACAACAATGTTTGCATTCGTCGAACGGTGTAGGAATGTTGAAACTGAAAGGAAAAAGCGGAGGAGAAGATGAAGAGGACGAAGACGAGGATGAATGGGAGGAAGATTCTGAAGAGGAGGAGGAAGAATCAGGGGAAGATGAGAATAATGATCATTCGAGGAAGAAGTCACGGAGGGTTTCGGTTTCGGTTTCATCGACGGCGATGATGCAACAGCTGAGTAGCGAAGTGACGAACGTGTTGCAAGACGGAGTGAAGAGTTGTTGGGAGAAGAAGCAATGGATGAAGAAGAGGGTTGTGCAGTTGGGAGAAGAACGAGTGAACTATCATGTTGAAGCGTTTGAGATTGAGAAACAAAGGTTGAAATGGAAGAGGTTTAGTAGTAACAAAGAGAGGGAAATGGAGAGGCAGAAGCTTGAAAATGAAAGGAAGTGTTTGGAAATTGATAGAATGGTTTTGTTGCTTCGGCAGAAGGAGGTTGAATTGCAGAATACTCAGCAGATGCAGCAGCAACAGCATTCTTCTACTTAG 1350 0.4178 MESNGLGGGIFPSSTINNGFIGVENPSKQQQNSHTLHHHHHHHQMVSYDQPHPSIKQTYPSYSSKSIMSNKAHQQINLSDEDEPCFGADEASGGGDPKRKGSPWHRMKWTDTMVRLLIMAVYYIGDEAGTSEIGVDNKKKVSGLLQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDIVGKGTACRVVENQSLLDSMDLSTKLKDEARKLLNSKHLFFREMCAYHNSCGHGNNTLQQQQSSNETQPQQQHPPQQQQQQQPQQEQQQQCLHSSNGVGMLKLKGKSGGEDEEDEDEDEWEEDSEEEEEESGEDENNDHSRKKSRRVSVSVSSTAMMQQLSSEVTNVLQDGVKSCWEKKQWMKKRVVQLGEERVNYHVEAFEIEKQRLKWKRFSSNKEREMERQKLENERKCLEIDRMVLLLRQKEVELQNTQQMQQQQHSST* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0856 449 PANTHER F16F4.11 PROTEIN-RELATED 1 449 - -
Psa3g0856 449 Coils Coil 296 323 - -
Psa3g0856 449 Coils Coil 402 429 - -
Psa3g0856 449 MobiDBLite consensus disorder prediction 296 320 - -
Psa3g0856 449 MobiDBLite consensus disorder prediction 27 52 - -
Psa3g0856 449 Gene3D - 109 183 - -
Psa3g0856 449 MobiDBLite consensus disorder prediction 244 334 - -
Psa3g0856 449 Pfam Myb/SANT-like DNA-binding domain 106 232 IPR044822 -
Psa3g0856 449 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 449 - -
Psa3g0856 449 MobiDBLite consensus disorder prediction 244 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0856 Psa-Chr3 77462444 77464909 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa3g0856 Myb_DNA-bind_4 7.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0856 - - aprc:113863792 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0856 3 77462444 77464909 Psa3g0856 3 77462444 77464909 ECH
Psa3g0856 3 77462444 77464909 Psa6g1763 6 102628634 102630876 PCT