Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0835 ATGCCTGAAAACACGACTACTCATGCATCGTCGTCGTCGGGCAAAGCTTCGACCGGCCGTCATCCGGTGTACCGTGGAGTGAGGCGTAGAAATAACGGAAAATGGGTGTCTGAAATTCGTGAACCGAAAAAACCTAACAGGATTTGGTTAGGAACATTTCCAACACCTGAGATGGCAGCTATTGCTTATGATGTAGCTGCTCTTGCTCTTAAGGGTAAAAATGCAGAACTGAATTTCCCTAACTCTTCCTCTTCTTTACCTGTTCCTGCTTCTTCCTCTGCCCGCGATATTCAGACGGCTGCAGCTACTAGTGCTGCAGCCGCCATAGGCGCAGCAGAGGATGCACTTGTGAATATTAATGATGGAAATGATAGGAACCATGCAGCAATGGCGACTCAACAAGATTTTTTTTCAGTTGGTGAGAATGAGAATAGTTATAATGTTAATGAATTTATGGATGAGGATTTGATCTTTGATATGCCTAATGTTTTGGCTAATATGGCGGAAGGAATGCTACTTAGTCCTCCTCGTTTCGACTTTGCGAGTAACGAATACGATGATACACCAGAAAGTTATGTCTGTGATGATCCGAACCTTTGGAGTTATCCTTTTTTTCCATAA 621 0.4348 MPENTTTHASSSSGKASTGRHPVYRGVRRRNNGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKNAELNFPNSSSSLPVPASSSARDIQTAAATSAAAAIGAAEDALVNINDGNDRNHAAMATQQDFFSVGENENSYNVNEFMDEDLIFDMPNVLANMAEGMLLSPPRFDFASNEYDDTPESYVCDDPNLWSYPFFP* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0835 206 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Psa3g0835 206 MobiDBLite consensus disorder prediction 1 31 - -
Psa3g0835 206 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Psa3g0835 206 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Psa3g0835 206 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Psa3g0835 206 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Psa3g0835 206 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Psa3g0835 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 203 - -
Psa3g0835 206 MobiDBLite consensus disorder prediction 1 18 - -
Psa3g0835 206 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Psa3g0835 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 6 203 - -
Psa3g0835 206 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0835 Psa-Chr3 75171216 75171921 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0835 13 203 AP2-EREBP Transcription Factor Family AT2G36450 57.812 8.88e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g0835 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0835 - - gmx:100799620 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0835 3 75171216 75171921 Psa3g0835 3 75171216 75171921 ECH