LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa3g0819	ATGGGTTCGTTACCTGGCACTGGTGAAATAGTTGAAGCAACGGAGGATTGGAATATAGGGAAAGGTGTTGTAAGGATTTGTCAGTCTGAGAAAAATAAGAAGCCTTTGGTACTGAACCTGGGATACAAGGATAATATATATGATGATATTAACAAGTTGTTTGAATCAATTTCTCTTAAATCTTCACCGAGGGATTTGAGTATTTCACAAGATGGTTCCAGTCATAAGCTGAAAAACACGTTAAAACAACCTATGACATTGGGTGTTCCTCGCTCGCCGCGAGTTGGGAGTTCTGAGAGTGTTAATTTGAAGCAGGCATTGAGAGACCTTTGTATATCTAAGGCATCAGAAGTGGCTGCCATGAAACGGTTATCAAAGTCGACAGCTTCTCCGAGAGTTTCGGAGGTTGGGAGGATTCAAACATTGTATAGTTCAGTTGTAGATGAAGCTTGTGTTGATGAAGGTAAAGGGCGTAGAGTGGAGATATCTCTAGTGTCAGAAAAAAGCAAGTCACCTTCCTTAAATAAAGCTGGGTTTCAATCACAGCTTGTTGTACCTGTTCAACCAGAAAAACAAACCTCGGCGTCTTTTCCATCTACTTGTGTATTAAATACTGGACGGAAAGGTAGGCTGCAAACAGCATCTTCTTCCTCTACTTCTGTAGAGGGCAGCACAGCTAAGAAACCGCCACACCGCGCCCCTCGCACAGTCAAAATGGTCATCAAGAACAAGAATGTGAGTAAGAAGAAAGTGAAGGAGGATTCAAATTCTGCATCAAATGAAGTTAGCAAGTCTGTTTCTGGCTCAGCTCGGCTCGTTTGTGAAAGATGTAGGTGTGTTTTGGAGAATACAAGGGAAGATGAAAGCCAAGAGATTATGGCCTTGGACTATACTAGTCCTGGAACTGGAGTGAAATCGAGTAATGTGTACTCTGGTTTAGATAAACCAGGTTTGGCATCAACTAGTGGTAATATAAGCAAAGCAGTTGTAAAGGTGGAGAAGATTCAGAAGAGCACCAAGTTGAAAGAGCAGTTTGATTTTTCACAAAGCTCGAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACTAGTACCAGTGACGAGAGCAACATGAGTGGCTCAAGTTGTGGCACTAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACACGCTCAAATGCAGCAAGGAGTCTTGGGCTTGAAACATTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCTGAACTAATGGGCACAAGTTGCTTGTTTGCTATTAAGGTTATGGACATTGAATTTTTGGCAAGAAGGAAGAAAATGCCTAGGGCTCAAACTGAAAGGGAAATATTAAGGATGCTGGACCATCCATTTCTTCCCACATTGTATGTGCAATTCACATCAGATAATCTCTCATGTTTAGTCATGGAGTATTGTCCAGGCGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGATGTTTTTCGGAACTAGCAGCAAGGTTTTATGTTGCTGAAGTCCTACTTGCTTTGGAGTATTTGCACATGCTTGGAGTTGTTTACCGTGATCTGAAACCTGAAAACATTCTTGTTCGAGAAGATGGCCACATTATGCTCACTGATTTTGATCTGTCGTTGAGGTGTGCTGTTAGTCCAACACTTTTGAAGTCGTCTTCTGACGTTGACCCTGCAAAAGTTTCTGGTCTTAGTGCACAATCAAGTTGCATTGAACCATTATGCATTGAACCTTCTTGTCAAGTTTCATGCTTCAGCCCTAGATTCCTACCTGCTGCTGCAAAAGCAAGGAAATTAAAAGTTGATAATGTTGCCCGTGTCAGATCACTGCCGCAGCTTGTGGCTGAGCCCACTGATGCAAGATCAAACTCATTTGTTGGTACACACGAATACTTGGCACCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTTTATATGGTAGAACACCATTTAAAGGTTATAACAATGAAGAAACATTAGCAAATGTGGTCTTGCAAAGTCTTAGATTCCCCGATGACCCACTTATCAGTTTTGAAGCTAAGGATCTGATTAGAGGGTTGTTAGTTAAAGAGCCTGAAAATCGTCTGGGTTCAGAGAGAGGGGCTGCTGAGATTAAAAAACATCCCTTCTTTGAGGGTCTTAACTGGGCCTTAATTCGATGCGCAATCCCACCAGAACTTCCAGAGTTTTGTGATTTTGGAGTTTTAGACACGGCCTCACAAGGCAAGGGTGCTAAGTATTTAGAGTATAATGTAGGAGAGCACGTGGAATTCGAGTTGTTTTAG	2364	0.4222	MGSLPGTGEIVEATEDWNIGKGVVRICQSEKNKKPLVLNLGYKDNIYDDINKLFESISLKSSPRDLSISQDGSSHKLKNTLKQPMTLGVPRSPRVGSSESVNLKQALRDLCISKASEVAAMKRLSKSTASPRVSEVGRIQTLYSSVVDEACVDEGKGRRVEISLVSEKSKSPSLNKAGFQSQLVVPVQPEKQTSASFPSTCVLNTGRKGRLQTASSSSTSVEGSTAKKPPHRAPRTVKMVIKNKNVSKKKVKEDSNSASNEVSKSVSGSARLVCERCRCVLENTREDESQEIMALDYTSPGTGVKSSNVYSGLDKPGLASTSGNISKAVVKVEKIQKSTKLKEQFDFSQSSKSSQGEYSSSTSTSDESNMSGSSCGTRPHMSKDVRWEAIRHAQMQQGVLGLKHFNLLKKLGCGDIGTVYLAELMGTSCLFAIKVMDIEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRCFSELAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLKSSSDVDPAKVSGLSAQSSCIEPLCIEPSCQVSCFSPRFLPAAAKARKLKVDNVARVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGYNNEETLANVVLQSLRFPDDPLISFEAKDLIRGLLVKEPENRLGSERGAAEIKKHPFFEGLNWALIRCAIPPELPEFCDFGVLDTASQGKGAKYLEYNVGEHVEFELF*	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa3g0819	787	Pfam	Protein kinase domain	406	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa3g0819	787	Pfam	Protein kinase domain	634	737	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa3g0819	787	Gene3D	Transferase(Phosphotransferase) domain 1	630	751	-	-
	Psa3g0819	787	MobiDBLite	consensus disorder prediction	208	225	-	-
	Psa3g0819	787	MobiDBLite	consensus disorder prediction	231	245	-	-
	Psa3g0819	787	Gene3D	Transferase(Phosphotransferase) domain 1	485	553	-	-
	Psa3g0819	787	SUPERFAMILY	Protein kinase-like (PK-like)	380	756	IPR011009	-
	Psa3g0819	787	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	526	538	IPR008271	GO:0004672\|GO:0006468
	Psa3g0819	787	MobiDBLite	consensus disorder prediction	208	263	-	-
	Psa3g0819	787	PANTHER	FLIPPASE KINASE 1-RELATED	1	787	-	-
	Psa3g0819	787	MobiDBLite	consensus disorder prediction	346	378	-	-
	Psa3g0819	787	CDD	STKc_phototropin_like	403	755	-	-
	Psa3g0819	787	MobiDBLite	consensus disorder prediction	346	379	-	-
	Psa3g0819	787	ProSiteProfiles	Protein kinase domain profile.	405	737	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa3g0819	787	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	1	787	-	-
	Psa3g0819	787	SMART	serkin_6	405	737	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa3g0819	787	Gene3D	Phosphorylase Kinase; domain 1	403	484	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa3g0819	Psa-Chr3	72082315	72086882	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa3g0819	199	787	AGC Kinase Gene Family	AT3G52890	60.945	0.0	746

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Psa3g0819		Pkinase	5.8e-35	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa3g0819	3	72082315	72086882	Psa3g0819	3	72082315	72086882	ECH