Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0793 ATGATTTGCCAAAAAACATGGCTGGAATATCTGGCTGAAAGAAACATCACATTTTTTAAGAGAAAGAATGATCTTTTTCAGAAAGCGTGTGAGTTATCAGTTCTTTGTGGTGCTAAAGTGTGTGTGTTTGGATTCACCCCAACTGGTAACCCATTTGTTTTTGGTTCTCCATCTTTCCATGCTGTAATTGATGAGTACCTTGACGAAGGTCAAGATCTAGAAGGCGAATTATCAAGCCAAAATGTAGAACCTTCTGAAAATGGGGAAATCAAAAAGCTCTACACACAACTGAGGTGTGTAACCAAAGAGATGAAGACTGAGAAAAAGAAGATGGAAAAAATTGACAAAGGTAATGTTTCCATTGTCCCTGATAATCTTGGTTTTGAGGAGCTTCTTAAAGTGAAGGCTTCGTTGAAAAAGCTTCAGGATGAAATTAAGGTGGCATCATCTTTGCTCCTCCTTGCAAAGAAACAACCTTAA 480 0.3792 MICQKTWLEYLAERNITFFKRKNDLFQKACELSVLCGAKVCVFGFTPTGNPFVFGSPSFHAVIDEYLDEGQDLEGELSSQNVEPSENGEIKKLYTQLRCVTKEMKTEKKKMEKIDKGNVSIVPDNLGFEELLKVKASLKKLQDEIKVASSLLLLAKKQP* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0793 159 ProSiteProfiles MADS-box domain profile. 8 58 IPR002100 GO:0003677|GO:0046983
Psa3g0793 159 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 13 158 - -
Psa3g0793 159 SMART madsneu2 1 57 IPR002100 GO:0003677|GO:0046983
Psa3g0793 159 Coils Coil 138 158 - -
Psa3g0793 159 PRINTS MADS domain signature 20 35 IPR002100 GO:0003677|GO:0046983
Psa3g0793 159 PRINTS MADS domain signature 35 56 IPR002100 GO:0003677|GO:0046983
Psa3g0793 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 54 IPR002100 GO:0003677|GO:0046983
Psa3g0793 159 Gene3D - 12 74 IPR036879 GO:0003677|GO:0046983
Psa3g0793 159 PANTHER MADS BOX PROTEIN 13 158 - -
Psa3g0793 159 SUPERFAMILY SRF-like 8 68 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0793 Psa-Chr3 70112042 70113100 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0793 14 113 Type I MADS-box Gene Family AT2G34440 35.294 5.47e-16 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa3g0793 SRF-TF 4.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0793 - - mtr:MTR_4g094638 120.168