Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0761 ATGCCCGAGACAAGGCAGAAAGAAGGAACGGCCCAAAATTCAGAGTCAACAGGGGGAAACAGTGATCCGGAAAAACCCACAGATTCTGAGGTTTACATTGGCGGAATTCCTCATGACATTTCTGAAAAAGATTTAAGGGTCTTCTGTCGATCTGTGGGAGAAGTTGTAGAGGTAAGGATTATGAAGGGAAAAGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCAAAGGCTATCGAGGAGTTGAACAACACTGAATTCAAGGGAAACAAAATAAAGTGCTCAACGTCTCAAGTTAAGCATAGGTTATTCATTGGAAATGTTCCTAAAGATTGGACTGTTGAAGATATGAAGAAAGTCATTGCCAAGGTTGGCCCTGGTGTCATTGCTGTGGAACTGTTGAAGGATCCACAGAGTTCTGGCCGTAATCGGGGATTTTCTTTTATTGAGTATCACAACCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCCAATTTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGATTCATCAGCATCCTCTCAGGTGAAAGCAGTATATATAAAGAACCTTCCAGAAAACATAACGCAGGATCGTCTGAAGGAGCTGTTTGAACATCATGGTAAGATCACAAAAGTAGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGCAGATATGGTTTTGTGCACTTTGCTGATAGATCATGTGCAATGAAGGCATTGAAGAACACAGAGAAGTATGAGATTGATGCTATACTTCCTACTTATCCACCTCCTCTTGGTTATAGTATGGTTGGAGGTGGATATGGTGCTGTTGGTGCAGGATATGGTGCCACTGGCTTTGCACAGCCACTAATGTATGGTCCGGGAGCAACCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGATTGCATATGTATTGCAACAACCAGGTTTACCGCAGGCAGGCTTGCAACAGCCAGGTTTTCAACAGCATGCTCCTTCACCAGTATCTCGACATGGCAGGAGTGGTGGTGGTAGCTCAAGTGGTGAAAAACGCAATCACGATAATAACCGTAATCGTGGTCCTGGCCGATATAATCCCTACTAA 1155 0.4372 MPETRQKEGTAQNSESTGGNSDPEKPTDSEVYIGGIPHDISEKDLRVFCRSVGEVVEVRIMKGKEAKGYAFVTFKTKELASKAIEELNNTEFKGNKIKCSTSQVKHRLFIGNVPKDWTVEDMKKVIAKVGPGVIAVELLKDPQSSGRNRGFSFIEYHNHACAEYSRQKMSNSNFKLDNNAPTVSWADPRNSDSSASSQVKAVYIKNLPENITQDRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSCAMKALKNTEKYEIDAILPTYPPPLGYSMVGGGYGAVGAGYGATGFAQPLMYGPGATPAGMAMMPMLLPDGRIAYVLQQPGLPQAGLQQPGFQQHAPSPVSRHGRSGGGSSSGEKRNHDNNRNRGPGRYNPY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0761 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 267 IPR000504 GO:0003723
Psa3g0761 384 MobiDBLite consensus disorder prediction 339 366 - -
Psa3g0761 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 104 IPR000504 GO:0003723
Psa3g0761 384 Gene3D - 189 270 IPR012677 -
Psa3g0761 384 Gene3D - 105 187 IPR012677 -
Psa3g0761 384 SMART rrm1_1 107 184 IPR000504 GO:0003723
Psa3g0761 384 SMART rrm1_1 30 100 IPR000504 GO:0003723
Psa3g0761 384 SMART rrm1_1 201 272 IPR000504 GO:0003723
Psa3g0761 384 PANTHER GEO13361P1-RELATED 26 268 - -
Psa3g0761 384 PANTHER GEO13361P1-RELATED 268 382 - -
Psa3g0761 384 PANTHER - 26 268 - -
Psa3g0761 384 PANTHER - 268 382 - -
Psa3g0761 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 266 IPR000504 GO:0003723
Psa3g0761 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 IPR000504 GO:0003723
Psa3g0761 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 98 IPR000504 GO:0003723
Psa3g0761 384 SUPERFAMILY RNA-binding domain, RBD 107 266 IPR035979 GO:0003676
Psa3g0761 384 MobiDBLite consensus disorder prediction 1 28 - -
Psa3g0761 384 SMART rrm2_1 30 100 IPR003954 GO:0003676
Psa3g0761 384 MobiDBLite consensus disorder prediction 1 24 - -
Psa3g0761 384 CDD RRM_SF 31 100 - -
Psa3g0761 384 SUPERFAMILY RNA-binding domain, RBD 13 105 IPR035979 GO:0003676
Psa3g0761 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 188 IPR000504 GO:0003723
Psa3g0761 384 Gene3D - 1 101 IPR012677 -
Psa3g0761 384 MobiDBLite consensus disorder prediction 339 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0761 Psa-Chr3 67738389 67742969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0761 16 267 Eukaryotic Initiation Factors Gene Family AT4G34110 26.119 4.52e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0761 K13161 - gmx:100798476 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0761 3 67738389 67742969 Psa3g0761 3 67738389 67742969 ECH