Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0725 ATGTCTGTACAAGAAACTACGTCGTTATGGTGGACTAGTCACCAACAACAACGACGACAAGAGAAGACGAAGAGTCATCAACAAGAGGAAGAAGGTGAATTAGAAGACGACGTCGTTTTAGAGTCAGTGATGAAACTGAAAACGGCCTCGGCCTCGGCTTCGGCTTCGTCCTCGTCGTCGGCGTCGGTATCAGAAGAAGAGAAAGAAGGTATGTTTGAGAAACCGTTGACACCAAGCGACGTTGGGAAGCTGAACCGCCTCGTGATACCGAAGCAACACGCGGAGAGATATTTCCCACTCGACTCAGAAGAAACGAAGGGGCTTTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGAGGTTTCGTTATTCGTATTGGAACAGTAGTCAGAGTTACGTTCTTACCAAAGGTTGGAGTCGTTATGTGAAAGATAAACGTCTTGATGCTGGCGACGTCGTTTTGTTTCAAAGACACCGTACACATCCTCACCGGTTTTTCATCTCTTGGAGGCGCCGCCATGGTACTGCCGCCGCAACAGCGACGGCTCATGTTGGCCCTAGTACTGACGGCAATGGTTCTGTTGGGTGGTCCATGGGACTCTATCCTGCGCATCCTTATCCTACGCATCATCACCCTTTCTCATACCATGCTGCAGGTGAAGGGTCCCAAAGTCAGAACACAAAGGCACCTTGTGGAAACAATTCGAGTACTTCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATGATTCCGAAACACCAGAGTGTTCCTATAATATGTCACAAGGACCACAATTGTATCACCACCTCCACCGTCAACCACCGTCAAACACTCACCATCACATGCTACGTCAACAACAACCATAG 894 0.4843 MSVQETTSLWWTSHQQQRRQEKTKSHQQEEEGELEDDVVLESVMKLKTASASASASSSSSASVSEEEKEGMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEETKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRTHPHRFFISWRRRHGTAAATATAHVGPSTDGNGSVGWSMGLYPAHPYPTHHHPFSYHAAGEGSQSQNTKAPCGNNSSTSRVLRLFGVNMECQPDNNINDSETPECSYNMSQGPQLYHHLHRQPPSNTHHHMLRQQQP* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0725 297 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 12 274 - -
Psa3g0725 297 MobiDBLite consensus disorder prediction 47 65 - -
Psa3g0725 297 MobiDBLite consensus disorder prediction 17 31 - -
Psa3g0725 297 MobiDBLite consensus disorder prediction 1 16 - -
Psa3g0725 297 ProSiteProfiles B3 DNA-binding domain profile. 72 174 IPR003340 GO:0003677
Psa3g0725 297 SMART B3_2 72 174 IPR003340 GO:0003677
Psa3g0725 297 Pfam B3 DNA binding domain 72 173 IPR003340 GO:0003677
Psa3g0725 297 MobiDBLite consensus disorder prediction 1 76 - -
Psa3g0725 297 CDD B3_DNA 71 161 IPR003340 GO:0003677
Psa3g0725 297 Gene3D - 66 182 IPR015300 -
Psa3g0725 297 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 274 IPR044800 GO:0003700
Psa3g0725 297 SUPERFAMILY DNA-binding pseudobarrel domain 71 174 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0725 Psa-Chr3 65690271 65692178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0725 65 259 RAV Transcription Factor Family AT5G06250 51.923 2.10e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa3g0725 B3 1.4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0725 - - cam:101494766 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0725 3 65690271 65692178 Psa3g0725 3 65690271 65692178 ECH