Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0685 ATGAACCACCACACATCACCACTCCTCCTCCTTCTCATCCTCCTACCTTCTCTTGTCCTCACAACCACCCACCCAAACGACCTCAAATTCCTCAACCAATTTAGAAACAACCTCGACAACCCCGAACTCCTACAATGGCCAACACAATCTCCCGACAACGACCCATGTTCCACTCCATCTTGGAAATTCATCTTCTGCCAAAACGACAGAGTCACTCAGATTCAAACCAAAAACCTTAATCTCTCCGGCACCTTACCTCAAAACCTCAACGAACTCACAGAACTCTTCAACATAGGTCTCCAGAACAACAAACTCCACGGTCCTCTACCGTCGCTAAAAGGCTTAACAAATCTCAAATACGCTTTCTTCGACAACAACGAATTCGATTCCATCCCAAACGATTTCTTCCAAGGGCTATCGAGTTTGGAAACTCTCGCATTGGATGACAATAACCTCAATGTCTCTACAAATGGTTGGCAATTTCCTTCTTCTTTGCAGGATTCACCTCAGTTGACAAATCTTTCTTGCATGAGCTGTAATTTGGCTGGTTCTTTGCCGGATTTTCTTGGGAAAATGAACTCTCTTTCGTTTTTGAAGCTTTCTGGTAACAGTTTAAAGGGTGAGATTCCGTTGAGTCTTAATGGTTCTGGTTTGCAGACTCTTTGGTTGAATAACCAGAAGGGTGAGGGTGAGTCACTTTCTGGGAGTATTGATGTTGTTGCTACTATGGTTTCTTTGACTAGTTTATGGCTTCATGGAAACAGGTTCACCGGTTCGATTCCGGAGAATATCGGAGACTTGGTTTCTCTTAAGGAACTTAACCTCAATGGCAATGATCTTGTTGGGCTTGTTCCTAGTTCTTTAGGGGATATGGAGTTGGATAGTCTTGATTTGAATAATAACAGGTTTATGGGTCCAATCCCAAATTTTAAAGCTTTGAAAGTTAGTTATAGTAACAATGATTTTTGTTTAAATGAAACTGGTGTTCCTTGTTCTTTTGAAGTTATGGCTCTTTTAGGGTTTTTGGGTGGGTTGAATTATCCTTCAAATTTAGTTGATTCATGGAGTGGGAATAGCCCTTGTGAAGGACCATGGTTGGGGATAAAATGCAATGCGGATGGTAAAGTTTCGATGATTGATTTGCCGCGTTTTAATCTTAGTGGTACTTTGAGTCCTTCTGTTGCGAATTTAGGTTCTTTAGTTGAAATCAGATTGGGGGGTAATCATATCGATGGCGTAGTGCCTAGTAATTGGACTAGTTTGATGAATCTGAAATTGTTGGATCTGAGTGACAATAATATTTCTCCACCTTTGCCGGTTTTTAGTAATGGATTGAAACCTATGGTTGATGGGAATTCTTTGTTGAATGGTGGTGGAACGGAAGGTCCTTCGTCGGGGAAAAACAGTCCGTCGGGTGGATCGGGGAATAACGGTGAAGGTACGAAGGGAGAGACGAATTCAAGTTCAGGTGATTCGGTTGAAACGAAAAAGTCCAAAAGGAAAAGCTTGGTTTTGATTGTAGCTCCCATTGCTGGTGTTGCGGCTGCTGCTTTTCTGTTGATTCCGCTTTATGCGTATTGTTTTAGGAGGACAAAGAATGGATTTCAGGCTCCAAGTTCACTCGTGGTTCACCCGAGAGATCCGTCTGATTCGGACAGTGCTGTAAAGATAGCTATTGTTAATAATACCAACGGAAGTGTTTCCACTTTGCCAGGGAGCGGGACTGGGAGTAGAAACAGCAGCGCGTTTGGGGAGTCTCATGTCATTGAAGCTGGAAATCTTGTGATATCGGTTCAAGTTCTAAGAAACGTGACAAAGAATTTCGCCCCTGAGAATGAGCTCGGCCGTGGCGGATTCGGAGTTGTTTATAAGGGAGAGTTGGACGACGGGACTAAGATTGCAGTAAAAAGAATGGAAGCAGGTGTGATAACCAATAAAGCATTGGATGAATTTCAAGCCGAAATTGCAGTTCTGTCAAAAGTTCGACATCGACATCTAGTGGCCCTTATAGGTTATTCCACCGAAGGTAACGAGAGAATTCTAGTGTACGAGTATATGCCACAAGGTGCTCTCAGTCAGCATCTTTTCCATTGGAAAAGCCTTGGACTCGAGCCTCTCTCGTGGAAGAGGAGGCTCAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATACTCTGGCTCATCAGAGCTTCATTCATAGGGATCTTAAGTCCTCAAATATTTTACTTGCCGATGATTTTAGAGCTAAAGTCTCGGATTTTGGATTGGTAAAACTTGCTCCTAATGGCGAAAAATCCGTAGTGACCAAACTTGCTGGGACCTTTGGATACTTGGCTCCTGAATATGCAGTGACAGGAAAAATCACAACCAAAGTAGATGTTTTCAGTTTCGGCGTTGTGTTAATGGAGCTGTTGTCTGGACTGATGGCACTTGATGAGGATAGACCCGAGGAAAGTCAATACTTGGCAGCATGGTTCTGGAATATAAAATCAGATAAGAATAAACTAATGGCTGCTATTGACCCAACTCTCGACATAAACGAAGAAACATTCGAGAGCGTCTCGATTATAGCCGAGCTAGCCGGACACTGCACAGCTAGAGAACCAAACCAGAGGCCAGAAATGGGGCATGCTGTCAACGTCCTTGCACCACTTGTTGAAAAATGGAAACCGTTTGACGACGACCCCGACGAGTATTCCGGCATCGACTACAGTCTTCCACTTAACCAAATGGTGAAGGGTTGGCAGGAGGCGGAAGGAAAAGACACGGGTTATATGGACTTAGAAGACAGTAAGAGTAGTATCCCCGCGAGACCTACTGGATTTGCAGATTCTTTTACTTCGACCGACGGCCGGTGA 2865 0.437 MNHHTSPLLLLLILLPSLVLTTTHPNDLKFLNQFRNNLDNPELLQWPTQSPDNDPCSTPSWKFIFCQNDRVTQIQTKNLNLSGTLPQNLNELTELFNIGLQNNKLHGPLPSLKGLTNLKYAFFDNNEFDSIPNDFFQGLSSLETLALDDNNLNVSTNGWQFPSSLQDSPQLTNLSCMSCNLAGSLPDFLGKMNSLSFLKLSGNSLKGEIPLSLNGSGLQTLWLNNQKGEGESLSGSIDVVATMVSLTSLWLHGNRFTGSIPENIGDLVSLKELNLNGNDLVGLVPSSLGDMELDSLDLNNNRFMGPIPNFKALKVSYSNNDFCLNETGVPCSFEVMALLGFLGGLNYPSNLVDSWSGNSPCEGPWLGIKCNADGKVSMIDLPRFNLSGTLSPSVANLGSLVEIRLGGNHIDGVVPSNWTSLMNLKLLDLSDNNISPPLPVFSNGLKPMVDGNSLLNGGGTEGPSSGKNSPSGGSGNNGEGTKGETNSSSGDSVETKKSKRKSLVLIVAPIAGVAAAAFLLIPLYAYCFRRTKNGFQAPSSLVVHPRDPSDSDSAVKIAIVNNTNGSVSTLPGSGTGSRNSSAFGESHVIEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVITNKALDEFQAEIAVLSKVRHRHLVALIGYSTEGNERILVYEYMPQGALSQHLFHWKSLGLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKSSNILLADDFRAKVSDFGLVKLAPNGEKSVVTKLAGTFGYLAPEYAVTGKITTKVDVFSFGVVLMELLSGLMALDEDRPEESQYLAAWFWNIKSDKNKLMAAIDPTLDINEETFESVSIIAELAGHCTAREPNQRPEMGHAVNVLAPLVEKWKPFDDDPDEYSGIDYSLPLNQMVKGWQEAEGKDTGYMDLEDSKSSIPARPTGFADSFTSTDGR* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0685 954 Pfam Leucine rich repeat 245 303 IPR001611 GO:0005515
Psa3g0685 954 MobiDBLite consensus disorder prediction 459 495 - -
Psa3g0685 954 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Psa3g0685 954 Pfam Leucine rich repeat N-terminal domain 335 371 IPR013210 -
Psa3g0685 954 Gene3D Phosphorylase Kinase; domain 1 574 685 - -
Psa3g0685 954 SMART LRR_typ_2 267 290 IPR003591 -
Psa3g0685 954 SMART LRR_typ_2 243 266 IPR003591 -
Psa3g0685 954 SMART LRR_typ_2 421 443 IPR003591 -
Psa3g0685 954 SMART LRR_typ_2 397 420 IPR003591 -
Psa3g0685 954 SMART LRR_typ_2 115 138 IPR003591 -
Psa3g0685 954 SMART LRR_typ_2 139 161 IPR003591 -
Psa3g0685 954 SMART serkin_6 608 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0685 954 MobiDBLite consensus disorder prediction 459 492 - -
Psa3g0685 954 Gene3D Ribonuclease Inhibitor 25 329 IPR032675 -
Psa3g0685 954 PANTHER OSJNBA0070M12.3 PROTEIN 8 954 - -
Psa3g0685 954 ProSiteProfiles Protein kinase domain profile. 608 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0685 954 MobiDBLite consensus disorder prediction 925 954 - -
Psa3g0685 954 Gene3D Transferase(Phosphotransferase) domain 1 686 900 - -
Psa3g0685 954 CDD STKc_IRAK 614 887 - -
Psa3g0685 954 Pfam Protein kinase domain 611 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0685 954 MobiDBLite consensus disorder prediction 940 954 - -
Psa3g0685 954 SUPERFAMILY L domain-like 334 443 - -
Psa3g0685 954 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 8 954 - -
Psa3g0685 954 SUPERFAMILY L domain-like 23 313 - -
Psa3g0685 954 Gene3D Ribonuclease Inhibitor 333 456 IPR032675 -
Psa3g0685 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 733 745 IPR008271 GO:0004672|GO:0006468
Psa3g0685 954 ProSitePatterns Protein kinases ATP-binding region signature. 614 636 IPR017441 GO:0005524
Psa3g0685 954 SUPERFAMILY Protein kinase-like (PK-like) 586 884 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0685 Psa-Chr3 61137245 61141029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0685 81 889 Receptor kinase-like Gene Family AT5G07280 31.808 1.17e-81 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Psa3g0685 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0685 - - gmx:100305366 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0685 3 61137245 61141029 Psa3g0685 3 61137245 61141029 ECH