Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0675 ATGAACGACTTACTCTCCGTCCAAAACGACGACAGCAACAGCCACCACCACGTCATCCAGATGGGGGAAACCTCCACCACCACCACGGCAAAGACACTCGGGAAATTCTTCGAAGAAGTGGAGTCAGTGAAGGAAGAATTGAAAGAGTTGGAGAAACTCCACGTAAGTCTCCGAAACTCGCACGGAAAGAGCAAAAGCCTTCACAGCGCCACCGCGGTGAAAGAGCTTCGTTCTCGAATGGACTCCGACGTTACTCTGTCTCTCAAGAAAGCTAAAGTGGTTAAGGCTCGCTTGGAGTTGCTTGACCGGTCCAACGAAGCGAGCCGGTCGTTGCCTGATTGTGGACCCGGTTCGTCTTCTGATCGAACCCGGTTGGCGGTGGTTAGTGGTTTGAGGAAGAATTTGAAAGATTCGATGGAGAGTTTTAATGCACTTAGGGAGCAGATATCATCGGAGTACAGAGCGACGGTGCAGCGGAGATACTTTACCATCACCGGAGAGAAACCTGATGACAAAACTGTCGATCTCCTCATCTCTACCGGTGAAAGCGAAACGTTTCTACAAAAAGCCATTCAAGAACAAGGAAGAGCAACAGTGATAGAGACAATACAAGAGATCGAGGAGAGACATGGTGCTGTGAAAGAGATAGAGAGAAACCTAAATGCGCTACATCAAGTGTTCTTAGACATGTCAGTAATGGTGGAAGCTCAAGGTGAAGAATTGAATGACATTGAAAGCCAAATGATGCGAGCAAATTCGTACGTTAGGAAAGGTGTACAACAAATACATGTTGCTAGGAAGCATCAAAAGAATAGCCGTAAATGGACATGTTTTGCCATTTTAGTCCTTCTCATTATCGCTTTGGTTATAATTCTTCCTATTGTTTTAAAAAATAATTAA 900 0.4544 MNDLLSVQNDDSNSHHHVIQMGETSTTTTAKTLGKFFEEVESVKEELKELEKLHVSLRNSHGKSKSLHSATAVKELRSRMDSDVTLSLKKAKVVKARLELLDRSNEASRSLPDCGPGSSSDRTRLAVVSGLRKNLKDSMESFNALREQISSEYRATVQRRYFTITGEKPDDKTVDLLISTGESETFLQKAIQEQGRATVIETIQEIEERHGAVKEIERNLNALHQVFLDMSVMVEAQGEELNDIESQMMRANSYVRKGVQQIHVARKHQKNSRKWTCFAILVLLIIALVIILPIVLKNN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0675 299 PANTHER SYNTAXIN-121 10 293 - -
Psa3g0675 299 MobiDBLite consensus disorder prediction 1 25 - -
Psa3g0675 299 SMART tSNARE_6 198 265 IPR000727 -
Psa3g0675 299 CDD SynN 33 190 IPR006011 GO:0016020
Psa3g0675 299 Pfam SNARE domain 241 291 IPR000727 -
Psa3g0675 299 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Psa3g0675 299 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Psa3g0675 299 Gene3D - 193 296 - -
Psa3g0675 299 Gene3D - 29 163 - -
Psa3g0675 299 CDD SNARE_syntaxin1-like 202 262 - -
Psa3g0675 299 ProSitePatterns Syntaxin / epimorphin family signature. 209 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Psa3g0675 299 PANTHER SYNTAXIN 10 293 IPR045242 -
Psa3g0675 299 SUPERFAMILY t-snare proteins 33 258 IPR010989 GO:0016020|GO:0016192
Psa3g0675 299 SMART SynN_4 28 154 IPR006011 GO:0016020
Psa3g0675 299 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0675 Psa-Chr3 60223244 60225787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0675 21 277 SNARE and Associated Proteins AT3G11820 65.370 2.85e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0675 K08486 - gmx:100808718 390.193