Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0669 ATGACTTCTGCTCAATTGTCTGAGATCTTTGCAGAAGCTGGCACTGTCGTCTCTGTTGAGGTGGTGTATGATCGAGTAACGGCCAGAAGTAGAGGATTTGCATTTGTTACAATGAAGAGTGTTGAAGATGCTAAAGCAGCAATTCAAATGTTTGATGGTTCTCAAGTTGGTGGTAGGAGTGCTAAGGTGAACTTTCCAGAAGTGCCCATAGGAGGTGAAAGGGTAGTAGTAATGGGAAAAATAAATAGAAACGGATACAAAGGCTTTGTAGACAGTCCTCACAAGATGTATGCTGGAAACCTTGGCTGGGGACTGGACTCTCAGAATCTTAGAGATGCCTTTGCTGAACAGCCGGGACTATTGGGTGCTCGAGTCGTCTATGAGAAGGACAATGGAAGATCTCGAGGTTTTGGATTCGTTACTTTTGAAACTGCTGAGGATTTACAGGCTGCTTTGAAGGCTATGAACGGCGTGGAGGTTCAGGATCGGCCGCTGCGATTGAATTTGGCTGCAGAGAGGAAACCTTCTTCTCCTCCTCCAGTAATTAAGGAAAGTACAGCAAGCAATGTTGATAGTTCACCTTCATCTCCTCCTCCAGTAATTGAGGAAAGTACAGCAAGCAATGTTGATAGTTCACCTTCATCTCCTCCTCCAGTAATTGAGGAAAGTACAGCAAGCAATGTTGATAGTTCGGAATTGGTGTCTAGCGCAAGTGCATAA 720 0.4472 MTSAQLSEIFAEAGTVVSVEVVYDRVTARSRGFAFVTMKSVEDAKAAIQMFDGSQVGGRSAKVNFPEVPIGGERVVVMGKINRNGYKGFVDSPHKMYAGNLGWGLDSQNLRDAFAEQPGLLGARVVYEKDNGRSRGFGFVTFETAEDLQAALKAMNGVEVQDRPLRLNLAAERKPSSPPPVIKESTASNVDSSPSSPPPVIEESTASNVDSSPSSPPPVIEESTASNVDSSELVSSASA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0669 239 MobiDBLite consensus disorder prediction 181 239 - -
Psa3g0669 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 166 IPR000504 GO:0003723
Psa3g0669 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1 60 IPR000504 GO:0003723
Psa3g0669 239 SMART rrm1_1 1 64 IPR000504 GO:0003723
Psa3g0669 239 SMART rrm1_1 95 168 IPR000504 GO:0003723
Psa3g0669 239 MobiDBLite consensus disorder prediction 170 239 - -
Psa3g0669 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 68 IPR000504 GO:0003723
Psa3g0669 239 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 1 183 - -
Psa3g0669 239 Gene3D - 81 178 IPR012677 -
Psa3g0669 239 Gene3D - 1 74 IPR012677 -
Psa3g0669 239 SUPERFAMILY RNA-binding domain, RBD 2 66 IPR035979 GO:0003676
Psa3g0669 239 SUPERFAMILY RNA-binding domain, RBD 91 178 IPR035979 GO:0003676
Psa3g0669 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Psa3g0669 239 PANTHER OS02G0815200 PROTEIN 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0669 Psa-Chr3 59864672 59865896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0669 1 199 Eukaryotic Initiation Factors Gene Family AT3G16380 30.732 7.00e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0669 - - aprc:113861916 281.952