Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0668 ATGGCAACGTACTTTCATGGAAATTCTGAAATTCAATCCGGTGGCGGCGGCGGAGGCGGTGCCGACGGACTTCAAACGCTTGTTCTCATGAATCCAGGTTATATACAATACTCAGACACGACACAGCAGCCACAGCCTCAATCTCAACCACCTTCTCACGCGGCGGCATCGGGGAACTATGTTTTTCTCAACTCGACTGCCGCTGAAAACAACTCGTTCTCACCTCACGCGCCGCCTTCCAACACACAACAATTTGTCGGCATACCGCTCAACCACCAGCACCAGCACCAGCACCAACATCAAATCCACGCCCACCACGAGGTTGTCCCTTCGCTGCATGGCTTCCTTCCGCACATGCAGTACAATCAATGGAACACGATTGACCCTTCCACGGCGGCGCGTGAGACACCACGCGCTCAGCAAGGATTGTCTTTGAGCCTATCTTCGCAGCCGGCACGGTTTATGTCTTTTCGAGAAGGTCAGGCGGGAGGTATTTCCGGCGGCGGATCGCCGTCTCCGGCTTCTGGTATTACTAATAACGGGAATTCAGGGATTCAGGTTCTGAGTTCGAAGTATTTGAGGGCGGCGCATGAGCTTTTAGAAGAGGTTGTGAATGTGAATAGTGGTGTTGAATTGGGGAAGAAGAACAAGATGAATATCGGAGAATCGTCGGGAGTTGGTAGTGGAGGAGATGATTCAATAATCGGCGGCGGAGAGGGAAGTGGCGGGAAGCGTAGCTCTGAGCTATCAACGGCGGAGAGACAAGAAATACAGATGAAGAAAGCTAAGCTAATTACAATGCTTGATGAGGTGGAGCAAAGATACAGACAGTACCACCACCAAATGGAGGTTGTGGTTTCGTCCTTCGAGCAAGCGGCCGGGATCGGTTCCGCCCGAGCCTACACTGCCCTCGCACTGCAAACAATTTCGAAGCAATTTCGGTGTTTGAAAGATGCAATAACAGGACAAGTTAGAGCTATAAATAAGAGTTTGGGAGAAGAGGATTGTTTTGGAGGTAAAATAGAAGGTTCAAGGCTGAAATATGTTGATCATCAATTGCGTCAACAACGTGCTTTACAACAGTTGGGAATGATCCAGCATAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACATTTCCTTCACCCTTATCCCAAGGACTCAGACAAGCACATGCTTGCAAAACAAACAGGACTTACTAGGAGTCAGGTTTCGAATTGGTTTATAAATGCCCGAGTTCGACTTTGGAAGCCAATGGTAGAAGAAATGTACTTGGAAGAAATGAAAGAGAATGAACTGAATGCATCAGATGATAAATCAAGCAAGAGCAATGAAGATTCTTCAATGAAAATTACACCCTCTCAAGAGAAAGCTCTTATTACCTCTGAAACAGAACCTAAAGGCTACAATTCAACACAAGACATTTCAAAAAACCAAGAAACTCAAATAATTTCTGTTTCTAGACCACAAACATCACCACTTGTTGGAAATGTTCGGAACAATTCAGGTTTCAGTTTCATAGGATCGTCGGAACTAGAAGGTATACCTCAAACAAGTCCTAAAAAACCAAGGAACCATGAACTCATGCATACTCCTAATAGTTTCATTGATGTGAAACACAATGAGGCAAGCAATGAGCTGAAATTTGGTGATGAGAGACAAAATAGAGATGGTTACTCTTTCATGGGAAACCAAACAAATTTCATAGGTGGATTTGGACAATACCCGATTGGCGATATTGGTAGGTTTGATTCAGAACAATTCGCACCAAGGTTTTCGAGTAACGGTGTTTCGCTCACTCTTGGTCTTGATTCAATACAAGGAAATCATCAAACGTTTTTACCAAACCAAAACATTCAACTAGGAAGAAACATTGATATAAGTGAAACAAATGAGTTTGGTTCCATAAACACTTCTTCTCCTCAATATGAGAGTATCAACATGCAAAATCCAAAAAGGTTTGCTGCACAATTATTGCCTGATTTTGTGGCATAA 2031 0.4446 MATYFHGNSEIQSGGGGGGGADGLQTLVLMNPGYIQYSDTTQQPQPQSQPPSHAAASGNYVFLNSTAAENNSFSPHAPPSNTQQFVGIPLNHQHQHQHQHQIHAHHEVVPSLHGFLPHMQYNQWNTIDPSTAARETPRAQQGLSLSLSSQPARFMSFREGQAGGISGGGSPSPASGITNNGNSGIQVLSSKYLRAAHELLEEVVNVNSGVELGKKNKMNIGESSGVGSGGDDSIIGGGEGSGGKRSSELSTAERQEIQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGIGSARAYTALALQTISKQFRCLKDAITGQVRAINKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKENELNASDDKSSKSNEDSSMKITPSQEKALITSETEPKGYNSTQDISKNQETQIISVSRPQTSPLVGNVRNNSGFSFIGSSELEGIPQTSPKKPRNHELMHTPNSFIDVKHNEASNELKFGDERQNRDGYSFMGNQTNFIGGFGQYPIGDIGRFDSEQFAPRFSSNGVSLTLGLDSIQGNHQTFLPNQNIQLGRNIDISETNEFGSINTSSPQYESINMQNPKRFAAQLLPDFVA* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0668 676 Coils Coil 254 274 - -
Psa3g0668 676 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Psa3g0668 676 MobiDBLite consensus disorder prediction 221 252 - -
Psa3g0668 676 Gene3D - 373 452 - -
Psa3g0668 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 637 - -
Psa3g0668 676 MobiDBLite consensus disorder prediction 443 457 - -
Psa3g0668 676 MobiDBLite consensus disorder prediction 443 487 - -
Psa3g0668 676 CDD homeodomain 370 431 IPR001356 GO:0003677
Psa3g0668 676 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 637 - -
Psa3g0668 676 Pfam Associated with HOX 187 321 IPR006563 -
Psa3g0668 676 MobiDBLite consensus disorder prediction 458 487 - -
Psa3g0668 676 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Psa3g0668 676 SMART HOX_1 370 434 IPR001356 GO:0003677
Psa3g0668 676 SUPERFAMILY Homeodomain-like 371 437 IPR009057 -
Psa3g0668 676 SMART prehox3 182 322 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0668 Psa-Chr3 59688282 59693139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0668 1 676 Homeobox Transcription Factor Family AT2G35940 47.493 2.21e-166 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa3g0668 POX 4.6e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0668 - - gmx:100810901 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0668 3 59688282 59693139 Psa3g0668 3 59688282 59693139 ECH