Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0663 ATGGATCACGATGAGATTGATGTTCCTACCTATTTTCTCTGTCCCATTTCATTAGAAATCATGAAGGATCCGGTAACAGTTTCAACCGGCATAACCTACGACAGAGAAAGCATCGAAAAATGGTTATTCTCTAAGAAGAACAAAACATGTCCGATCACAAAACAACAGCTATCAGATTACACTGATCTAACACCAAACCACACACTTCGAAGACTCATTCAAGCTTGGTGTACACTAAACGCTTCACAAGGAATCGAAAGGATCCCAACTCCGAAACCACCGATCAACAAAATCCAAATCGCGAAACTCATCAAAGAAGCTTCTCACTCAAATCTCACCATTCAGATTAAATCTCTCAAAAAACTTAAATCATTTGCTTCTGGTAGTGAAACAAATAAACGCTGCATGGAAGATGCTGGTGCGGTTGAGTTCTTAGCTTCTATTGTGATAAACAATAGTTGCAACATCGATTCCGCGTCTTTATTAATATCAGAAACTAGCGTTAATCCTGCCGATGAAGCATTAAGTATACTTCATAACCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTCGCTTTCAAAAACGGCGAATTCATCGGCTCGTTAACGAAAGTTATGCAGAAAGGTTTCTTCGAATCAAGAGCTTATGCAGTATTTTTACTAAAATCAATGTCAGAAGTAGCTGAACCAGTGCAGTTACTACATCAAAACACCGAGTTATTCGTCGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCGGCACTTCAGACACTAATCCATCTCTGTCCATGTGGAAGAAACCGAATCAAAGGTGTTGAAGCAGGAACAGTTCCTGTCTTAATCGAACTTCTGTTGGAGAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTGTTGGAGTGTCTCTGTCAGTGTGCTGAAGGAAGAGCTGAACTTCTGAGACATGGAGGAGGAATGGCTGTTGTTTCGAAGAAGATTCTTAGGGTTTCGTCGGTCGCGAACGATAGAGCTGTTCGGATTCTGTTGTCTGTTTCAAGATTCTCTGCAACTCATAATGTTGTTCAAGAAATGCTTAAGCTTGGTGTTGTTGCTAAACTGTGTTTGGTTCTTCAAGTTGATTGTGGAAGCAAGACTAAGGAGAAAGCTAGGGAGATTCTTAAGATGCATGCTAGGGTTTGGAGAGATTCTCCATGCATACCTAGTAATTTGCTTTCTTCATACCCTAATTATATCTGA 1263 0.3967 MDHDEIDVPTYFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSKKNKTCPITKQQLSDYTDLTPNHTLRRLIQAWCTLNASQGIERIPTPKPPINKIQIAKLIKEASHSNLTIQIKSLKKLKSFASGSETNKRCMEDAGAVEFLASIVINNSCNIDSASLLISETSVNPADEALSILHNLHVSEAGLKNLLAFKNGEFIGSLTKVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHQNTELFVELVQVLKDQISQKVSKAALQTLIHLCPCGRNRIKGVEAGTVPVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRAELLRHGGGMAVVSKKILRVSSVANDRAVRILLSVSRFSATHNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARVWRDSPCIPSNLLSSYPNYI* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0663 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Psa3g0663 420 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
Psa3g0663 420 Gene3D - 96 405 IPR011989 -
Psa3g0663 420 SUPERFAMILY RING/U-box 3 81 - -
Psa3g0663 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Psa3g0663 420 Pfam U-box domain 8 78 IPR003613 GO:0004842|GO:0016567
Psa3g0663 420 SUPERFAMILY ARM repeat 100 396 IPR016024 -
Psa3g0663 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Psa3g0663 420 CDD RING-Ubox_PUB 12 55 IPR045210 -
Psa3g0663 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0663 Psa-Chr3 59394767 59396502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0663 1 417 U-box Gene Family AT3G52450 58.352 6.10e-175 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0663 - - gmx:100811258 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0663 3 59394767 59396502 Psa3g0663 3 59394767 59396502 ECH