Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0662 ATGGCTATGCAAAGTGTGTATCTGAAAGAACATGAAGGGATTGCACACAATTTTGTGGGGCAATTGTCATCTGGTAATAGTAATTCAGCAACAGCACCATGGTGGAGTGGTTTTGGATCTCCATCTGTTTACGGAGAGACTGGTGGTGGACAAATCAAATCGTTTTCGTTGGAGCCGTCTTTCGCGGTTGTTGACCAACTTGCTGGAAATAAGCAATCTGGTAGAGGAGCTGATCATGTGTTGGGGAAAGGGCATGGCAATCAGTTTACCATCTTTCCAGGTGATTTTAAAATGTCAGGTGATGCACAAAAGCCTCATACAGCCATATCATTGCAGTCATCACTCCCCGATACCCCGACACGTTTCGAGCTAGGATTTAGTCAGCCTATGATCTGTACGAAATATCCTTACGCAGATCAGTTTTATGGACTCATTTCAACTTATGGACCTCAAATTCCGGGACGCATAATGCTGCCGCTTAACATGACATCTGATGATGGACCGATTTATGTAAATGCTAAGCAGTACCATGGAATCATTAGACGCCGACAGTCCCGCGCCAAAGCTGTTCTTGGTCAGAAATTGATCAAACGCCGCAAGCCCTACATGCACGAGTCTCGTCATCTCCATGCAATGCGGCGACCAAGAGGGTGCGGTGGCCGTTTCTTGAACACGAAGAAATCATCCAAAGGAGATGGTAAAAGTGTAAGCAAAGTGCATAAATTCTGCGGTCAACAATTGCAGTGCAGCGGCTCTCCGAGTTCTGAACTCTTTGAATCTGATGTTGGAACTTTAAACTCGTCAAAAGAAACTAACGGTAGCAGTCCGAATATTTCTGGGTTCGAGGTGACTAGTTCGTATTCGAGGGGAAATCTTGGCAGCTTTTCCGTCAATCATCTTGGACCTACTGTCCACTCGTTGGCAGACATGATCGATGGTGGGCGTGGCGTCATCATGCCCACCAAATGGGTTACAGCAGCTGGCAACTGCTGTAATCTTAAAGCTTGA 1008 0.4613 MAMQSVYLKEHEGIAHNFVGQLSSGNSNSATAPWWSGFGSPSVYGETGGGQIKSFSLEPSFAVVDQLAGNKQSGRGADHVLGKGHGNQFTIFPGDFKMSGDAQKPHTAISLQSSLPDTPTRFELGFSQPMICTKYPYADQFYGLISTYGPQIPGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGQKLIKRRKPYMHESRHLHAMRRPRGCGGRFLNTKKSSKGDGKSVSKVHKFCGQQLQCSGSPSSELFESDVGTLNSSKETNGSSPNISGFEVTSSYSRGNLGSFSVNHLGPTVHSLADMIDGGRGVIMPTKWVTAAGNCCNLKA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0662 335 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 222 IPR001289 GO:0003700|GO:0006355
Psa3g0662 335 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 334 IPR001289 GO:0003700|GO:0006355
Psa3g0662 335 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 334 - -
Psa3g0662 335 Gene3D - 165 227 - -
Psa3g0662 335 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700|GO:0006355
Psa3g0662 335 SMART cbf3 164 225 IPR001289 GO:0003700|GO:0006355
Psa3g0662 335 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700|GO:0006355
Psa3g0662 335 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0662 Psa-Chr3 59246257 59250619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0662 34 334 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.750 5.34e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Psa3g0662 CBFB_NFYA 8.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0662 K08064 - gmx:100527677 480.33