Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0658 ATGGGAAACAACTGTGTTGGATCCAGAAGAACCTCCAAAGATCAATTCATTTTTCCACCTATTAATCTTCTTCCAACTTCATGGTCATGGTCACACACCGTTCAACAACACCCACCACCTGTTTGTAAAATTGACAACAAAGATTCACAGCCGGTTATTATGTTCAAGGAACAACATTCTAAACCAACCAATCCAAAACCAATGATGATTTTGCCTAATATTAAGAGGGTCCCAGCAAAAAGTGCTGGACTTAAAGCAGAATCGGTTTTGCTAACAAACTCTGGTTGCTTTAGTGAGTACTATGAGTTGGGAGATGAACTTGGGAAGGGACAATTTGGTGTAACTTCAGTTTGTTTCGAGAAAGCGACGGGGAAGAAATATGCATGCAAGTGTATTCCTAAGGTGAAATTGGTGAAAGAAGATGATTTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGTTGGGAGTTCTAATGTGGTATCTATTAAAGGAGCTTATGAAGATTCTGTTTTTGTTTATATTGTCATGGAGTTATGTGAAGGGGGTGAGTTGTTTGATAGGATTGTTCAAAGGGATCATTATACAGAAAGAAAAGCAGCTAAACTTGCTAGGACTATTGTTAGTGTGGTTGAGTCTTGTCACTCACTTGGAGTAATGCATCGTGATCTTAAACCGGAGAATTTTCTTTTTGTTGATGAGCATGAAGATTCAACACTTAAGGCAATTGATTTTGGATTGTCGGTTTTCTTCAAACCAGGAGAAAAGTTTAATGAGGTAGTAGGAAGTGCTTATTATATTGCACCCGAGATTCTCAGACAGTGTTATGGTCCAGAAGCTGATGTCTGGAGTGCTGGTGTGATCATATACCTTCTCCTATGTGGAACAGCTCCCTTTTATGGTGAATTGGAACAGGAGACATTTCACGAGGTTTTGCATGGTGAACTTGATTTCTCTTCGGATCCTTGGCCAAGTATCTCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTTAGAGATCCTAGTAAAAGGATAACAGCACATGAAGTTCTTTGCCACCCTTGGATTCAGGTTGACGGAGTTGCTCCAGACAAGCCTCTTGATTCCGCAGTTTTGAGTCGTCTAAAGCAATTCTCTGCTATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCCGAGAATCTTTCTGAAGAAGAAATTTCTGGGTTGAAAGAATTGTTTAAGATGATAGACACTGATAACACCGGTCAAATTACTTTCGAAAAACTCAAAACTGGACTGAAAATGTTCGGTGCCAATCTTAATGAATTTGAGATTTTTGATCTATTGAGTGCTGCAGATGTAGATAATAGTGGCACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTGAACAAAGTTGGTAGAGAAGATAATTTAGTAACAGCTTTTTCATATTTTGATAAAGATGGAAGTGGCTACATCACTCAAGATGAGCTTCAAAAAGTTTGTAAAGAATTCGGCATGGAAGATGTCCACTTAGAGGAAATGATCCAAGAAGCTGATCAAAATAATGATGGACAAATAGACTACAACGAATTTGTTGCTATGATGTTGAGAGGCAATGCAGATTTAGGCAATAGTGGTTCAAAGTGTAGAAGCACTAGCTTTAACATTGGATTAAGGAAGATAGAGGCACAATCAGTATGTTAA 1710 0.3854 MGNNCVGSRRTSKDQFIFPPINLLPTSWSWSHTVQQHPPPVCKIDNKDSQPVIMFKEQHSKPTNPKPMMILPNIKRVPAKSAGLKAESVLLTNSGCFSEYYELGDELGKGQFGVTSVCFEKATGKKYACKCIPKVKLVKEDDLEDVRREIQIMHHLVGSSNVVSIKGAYEDSVFVYIVMELCEGGELFDRIVQRDHYTERKAAKLARTIVSVVESCHSLGVMHRDLKPENFLFVDEHEDSTLKAIDFGLSVFFKPGEKFNEVVGSAYYIAPEILRQCYGPEADVWSAGVIIYLLLCGTAPFYGELEQETFHEVLHGELDFSSDPWPSISESAKDLVKKMLVRDPSKRITAHEVLCHPWIQVDGVAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAENLSEEEISGLKELFKMIDTDNTGQITFEKLKTGLKMFGANLNEFEIFDLLSAADVDNSGTIDYGEFIAATLHLNKVGREDNLVTAFSYFDKDGSGYITQDELQKVCKEFGMEDVHLEEMIQEADQNNDGQIDYNEFVAMMLRGNADLGNSGSKCRSTSFNIGLRKIEAQSVC* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0658 569 Gene3D Transferase(Phosphotransferase) domain 1 187 364 - -
Psa3g0658 569 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Psa3g0658 569 SUPERFAMILY EF-hand 398 539 IPR011992 -
Psa3g0658 569 Gene3D - 366 540 - -
Psa3g0658 569 ProSitePatterns EF-hand calcium-binding domain. 521 533 IPR018247 -
Psa3g0658 569 ProSitePatterns EF-hand calcium-binding domain. 451 463 IPR018247 -
Psa3g0658 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Psa3g0658 569 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Psa3g0658 569 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Psa3g0658 569 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Psa3g0658 569 CDD STKc_CAMK 101 358 - -
Psa3g0658 569 Gene3D Phosphorylase Kinase; domain 1 103 186 - -
Psa3g0658 569 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 49 545 - -
Psa3g0658 569 ProSiteProfiles Protein kinase domain profile. 101 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0658 569 SMART efh_1 442 470 IPR002048 GO:0005509
Psa3g0658 569 SMART efh_1 406 434 IPR002048 GO:0005509
Psa3g0658 569 SMART efh_1 478 506 IPR002048 GO:0005509
Psa3g0658 569 SMART efh_1 512 540 IPR002048 GO:0005509
Psa3g0658 569 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 545 - -
Psa3g0658 569 ProSiteProfiles EF-hand calcium-binding domain profile. 512 543 IPR002048 GO:0005509
Psa3g0658 569 SMART serkin_6 101 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g0658 569 Pfam EF-hand domain pair 419 469 IPR002048 GO:0005509
Psa3g0658 569 CDD EFh 482 537 IPR002048 GO:0005509
Psa3g0658 569 Pfam EF-hand domain pair 478 537 IPR002048 GO:0005509
Psa3g0658 569 SUPERFAMILY Protein kinase-like (PK-like) 99 360 IPR011009 -
Psa3g0658 569 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Psa3g0658 569 CDD EFh 407 466 IPR002048 GO:0005509
Psa3g0658 569 Pfam Protein kinase domain 101 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0658 Psa-Chr3 58740256 58743492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0658 73 561 EF-hand Containing Proteins AT5G04870 71.370 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Psa3g0658 Pkinase 7.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0658 K13412 - gmx:100814475 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0658 3 58740256 58743492 Psa3g0658 3 58740256 58743492 ECH
Psa3g0658 3 58740256 58743492 Psa6g1140 6 44538677 44541951 PCT