Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g0654 ATGGAAAACAAGGCTGAAAATCATATGACATCAGCTGCAGCCTTTGTTGAAGGAGGCATCCAAGAATATTCTGATGATGCTTGCAGTATATGTCTTGAAGAGTTCAGCGATAGGGATCCTTCAACTGTCACTGTTTGTCGGCACGAGTTTCACCTACAATGCGTTCTTGAATGGTGTCAAAGAAGCTCTCAATGTCCTATGTGTTGGCAACCTATCACCTTGAAAGATCCTATAGGTCAGGAATTATTTGAGGGAGTAGAGCAAGAGAGGAAATGGATGAACACTCCATCAAGAAATGTTAACACCTTTCATCACCCTTCTATTGGAAATTTTGGATTTCAAAGTCTTCGCATGGAAGAGAGAATACTTCAAAATTTAGCTATTGTTGCATCAATCGAAAGAAGACACCGTCTTGCTCAAATGGAAGGGATGGGGATTCAACAAATTGATCGCGATCGATCACAGTTTTCATTATTCTCGAATCAACATGCTGCACGAGAGAATCCAAACGCCATTCACATGAGTAGTCAATCTACTCCAATAACATCTAATGAAGATGAACCGTCACAACAGACACAACAATTGCAGAATGAAAGTTCTTCAACTTCTGATACTTTGCGGTCTAGATTTAATGCACTATCGACGAGATATAAAGAATCAATTTCAAAGGGTACAAGGGATTGGAAAGAAAGGTTGTTCTCTCGAAGTTGTTCCATGTCAGAACTCGGTTTAGAAGCGAGAAAAAAGGTGAACCTTGGAATTTCTAGTGTATCACAGTCGATGAAAAATAGGTTTGTAGATACTTCTTTCCCAAATCACATGGAGAATAGTTCTATGGTAAAGAGAAGCAACAATGATCATGTTGAAGCTAGTGGAGAAAACTCTTCATGCAATAACAATACACATGCTGCATCTTCTACTAGTTCACATTCAAATTGA 939 0.3898 MENKAENHMTSAAAFVEGGIQEYSDDACSICLEEFSDRDPSTVTVCRHEFHLQCVLEWCQRSSQCPMCWQPITLKDPIGQELFEGVEQERKWMNTPSRNVNTFHHPSIGNFGFQSLRMEERILQNLAIVASIERRHRLAQMEGMGIQQIDRDRSQFSLFSNQHAARENPNAIHMSSQSTPITSNEDEPSQQTQQLQNESSSTSDTLRSRFNALSTRYKESISKGTRDWKERLFSRSCSMSELGLEARKKVNLGISSVSQSMKNRFVDTSFPNHMENSSMVKRSNNDHVEASGENSSCNNNTHAASSTSSHSN* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g0654 312 SMART ring_2 28 68 IPR001841 -
Psa3g0654 312 MobiDBLite consensus disorder prediction 164 207 - -
Psa3g0654 312 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 173 308 - -
Psa3g0654 312 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 3 182 - -
Psa3g0654 312 Pfam Ring finger domain 27 68 IPR001841 -
Psa3g0654 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 173 308 - -
Psa3g0654 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 3 182 - -
Psa3g0654 312 SUPERFAMILY RING/U-box 20 75 - -
Psa3g0654 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 76 IPR013083 -
Psa3g0654 312 MobiDBLite consensus disorder prediction 289 312 - -
Psa3g0654 312 MobiDBLite consensus disorder prediction 286 312 - -
Psa3g0654 312 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g0654 Psa-Chr3 58518635 58520785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g0654 25 76 C3H Transcription Factor Family AT4G00335 44.231 9.94e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g0654 K19043 - gmx:100800419 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g0654 3 58518635 58520785 Psa3g0654 3 58518635 58520785 ECH